LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco11g01629	ATGTATTCCAATAAAGGGTATAAAGAGGATCGCAAAGCTGATCCTCGTTACATTGAGACCGACCCAAACGGTAGATATGCTCGGGTTGGAGATATTTTAGGAAAAGGGGCAATGAAGACAGTGTATAAAGCAATTGATGAGGTCCTTGGAATAGAGGTTGCATGGAATCAGGTTAAACTCAATGAGGCATTTCGCAAGCCAGAGGACTTGGAGCGGCTTTATTTAGAGGTTCATCTCCTCAGCACCCTCAAGCACCAATCCATCATGAAATTCTACACCTCTTGGATTGATGTCAACAATAAGACCTTCAACTTCATTACAGAAATGTTTACTTCAGGGACTCTAAGAGAATACAGGAAGAAATATAAGCATATAGGTCTGAAAGCAATAAAGAGTTGGGCTCGCCAAATCTTACAGGGTCTTGTTTATCTGCATGAACATCATCCTCCAGTAATTCATAGGGACCTCAAATGTGATAATATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTGGGTCTAGCAGCAATTCTCCATGGTTCCCAACCAGCTCACAGTGTTATAGGCACTCCCGAGTTCATGGCACCAGAATTATACGAGGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTTACATCTGATTATCCATACAGTGAATGTACTAACCCTGCACAGATATACAAAAAAGTAACATCGGGGAAGCTACCAGCAGCATTATTCAGGATTGAAGACACAGAAGCACAGAAGTTTATTGGCAAATGTCTAATAGCTGCAGCGAAGAGACCATCTGCAAAAGAATTGTTGAGTGATCAATTTCTTTTGTCTAATGATGCATCATCCATGGCAAAGATTGGGATTCAGAAGCCGTTTCTAAATTACAATGAAATGGAAAAACTTCAATTGAGTGATGATTTACCTATGACTAGAATGTCAATAACAGGGAAGCTGAATCCAGAAGATGACACTATCTTTCTCAAAGTGAAAATTTCTCAGAAGGATGGTTCTTGTAGGAATGTATACTTTCCCTTTGATATTTACACAGACACCCCTATTGATGTTGCAATAGAGATGGTGAAAGAGTTGGAAATCACAGATTTGAAGCCTTCTAATATTGCAAGTATGATTGAAGGAGAGATATCTGTGCTGCTGCCGAATTGGAGGAATAGTAACTGTCCAGACACCTGCCATACATTCAGTTATAATGATGACAAGGACAATGAAGATCCTCACCATCATTTCCACTCTGTTTCTTCTTGTTCATCATCCCAAGAGTCAACACCAGGCTTAATCACCAGAGTTGATGACTTATTAAATGGTTGTCATTGGCTCCATGGTGATGTACTTGATGATGCCAGTTCAATATGCTCTTCACATGGGAACTCAAACTTTTTTTCAGTGGATGACCAGGAGGAACACAATAAGGCTTCTACAAGAAAAGATAAACACCCCATCATAAAGAGCCACATGTGTACTAGATTTTCCCCTAATGAAGACCCCATCACTGTGAGCCATTGCAAAATTCTAGCAGGACCACAAACACCTTCTACTGGCAAAAGTAACAGGTTGATAGACAATCGTAGACTAACTAGGAACAAGTCATTAATTGATACGAGAAGCCAGCTACTGCACAGATCACTGGTTGAGGAGATAAACAAAAGAAGATTCAAGACAGTTGGAGCTGTGGAAAATATTGGATTTGTGACACCTTATGAGGTTACCAACAAAAAGTCAAATCCAGCATGTGGTGCTGTTGATGTGAACTCTTCAAGAAGTAGCAAGGGAAAAAACTTGAGGGACAATTTTTTTTGA	1845	0.3984	MYSNKGYKEDRKADPRYIETDPNGRYARVGDILGKGAMKTVYKAIDEVLGIEVAWNQVKLNEAFRKPEDLERLYLEVHLLSTLKHQSIMKFYTSWIDVNNKTFNFITEMFTSGTLREYRKKYKHIGLKAIKSWARQILQGLVYLHEHHPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPAALFRIEDTEAQKFIGKCLIAAAKRPSAKELLSDQFLLSNDASSMAKIGIQKPFLNYNEMEKLQLSDDLPMTRMSITGKLNPEDDTIFLKVKISQKDGSCRNVYFPFDIYTDTPIDVAIEMVKELEITDLKPSNIASMIEGEISVLLPNWRNSNCPDTCHTFSYNDDKDNEDPHHHFHSVSSCSSSQESTPGLITRVDDLLNGCHWLHGDVLDDASSICSSHGNSNFFSVDDQEEHNKASTRKDKHPIIKSHMCTRFSPNEDPITVSHCKILAGPQTPSTGKSNRLIDNRRLTRNKSLIDTRSQLLHRSLVEEINKRRFKTVGAVENIGFVTPYEVTNKKSNPACGAVDVNSSRSSKGKNLRDNFF	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco11g01629	614	FunFam	Probable serine/threonine-protein kinase WNK1	11	108	-	-
	Phco11g01629	614	Gene3D	Phosphorylase Kinase; domain 1	11	108	-	-
	Phco11g01629	614	FunFam	probable serine/threonine-protein kinase WNK9	110	290	-	-
	Phco11g01629	614	CDD	STKc_WNK	25	285	-	-
	Phco11g01629	614	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	12	439	-	-
	Phco11g01629	614	Pfam	Protein kinase domain	30	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco11g01629	614	ProSiteProfiles	Protein kinase domain profile.	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco11g01629	614	SMART	serkin_6	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco11g01629	614	Gene3D	Transferase(Phosphotransferase) domain 1	110	292	-	-
	Phco11g01629	614	SUPERFAMILY	Protein kinase-like (PK-like)	29	317	IPR011009	-
	Phco11g01629	614	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco11g01629	Phco-Chr11	12523153	12527464	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Phco11g01629		Pkinase	1.3e-47	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco11g01629	11	12523153	12527464	Phco11g01629	11	12523153	12527464	ECH
	Phco11g01629	11	12523153	12527464	Phco3g00461	3	3414962	3418953	PCT