Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01627 ATGGCACGCAAGGAACTTTCCATTGCTCTTCTGACTCTCATTGTTGTTCTCTTTGTTAACATGAATCTCCAAGGTGCCACTGCTGACTATGGTGGTTGGCAGGGTGGTCATGCCACTTTCTATGGAGGCGGTGATGCTTCTGGCACAATGGGTGGAGCATGTGGGTATGGAAATTTGTATAGCCAGGGTTATGGAACAGACACAGTAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTAAGCTGTGGTTCTTGCTTTGAAATGAGATGTGATGATGACCCAAGATGGTGCAAACCTGGGACTATTACCGTCACTGCTACTAACTTCTGCCCCCCAAATCCATCTTTGCCCAACAACAATGGTGGTTGGTGCAACCCTCCATTGCAACACTTTGATATGGCTGAACCTGCCTTCCTTCAAATTGCTGAATATAGAGCTGGAATTGTGCCAGTGGCCTTCAGAAGGGTTCCTTGTGCAAAGAAGGGAGGAATAAGGTTCACTATCAATGGTCACTCTTACTTCAATCTAGTTTTGATCACCAATGTGGGTGGTGCTGGGGATGTGCATTCAGTGTCCATCAAAGGGTCCAAAACTGGGTGGCAACCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTCAATGGACAAGCCCTCTCTTTTCAAGTGACCACCAGTGATGGCAGAACTGTGGCAAGCTACAATGTGGCACCAGCCAACTGGCAATTTGGCCAGACCTTCCAAGGAGGCCAATTTTAG 768 0.4779 MARKELSIALLTLIVVLFVNMNLQGATADYGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTDTVALSTALFNNGLSCGSCFEMRCDDDPRWCKPGTITVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCAKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRTVASYNVAPANWQFGQTFQGGQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01627 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Phco11g01627 255 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Phco11g01627 255 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Phco11g01627 255 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Phco11g01627 255 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Phco11g01627 255 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Phco11g01627 255 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Phco11g01627 255 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Phco11g01627 255 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Phco11g01627 255 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Phco11g01627 255 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Phco11g01627 255 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Phco11g01627 255 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Phco11g01627 255 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Phco11g01627 255 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Phco11g01627 255 Pfam Lytic transglycolase 68 152 IPR009009 -
Phco11g01627 255 FunFam Expansin 22 159 - -
Phco11g01627 255 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Phco11g01627 255 FunFam Expansin 163 255 - -
Phco11g01627 255 Gene3D - 162 255 IPR036749 -
Phco11g01627 255 SMART dpbb_1 68 153 IPR007112 -
Phco11g01627 255 SUPERFAMILY Barwin-like endoglucanases 32 181 IPR036908 -
Phco11g01627 255 Gene3D - 18 159 IPR036908 -
Phco11g01627 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 163 IPR007112 -
Phco11g01627 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Phco11g01627 255 CDD DPBB_EXPA_N 32 158 - -
Phco11g01627 255 PANTHER EXPANSIN-A15 11 255 IPR002963 GO:0009664
Phco11g01627 255 Pfam Expansin C-terminal domain 164 241 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01627 Phco-Chr11 12513955 12516021 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01627 11 12513955 12516021 Phco11g01627 11 12513955 12516021 ECH
Phco11g01627 11 12513955 12516021 Phco6g00832 6 8200928 8203694 ECH
Phco11g01627 11 12513955 12516021 Phco3g00464 3 3458664 3460752 ECH
Phco11g01627 11 12513955 12516021 Phco3g00464 3 3458664 3460752 PCT