Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01625 ATGTTGCCGGCTTCCAATTGCCGGTCGCCGCCGCGCCGCGAGCTTGAAGGAGGAGGCGATTCGTTGCTGTGGGTGAGTTGTGTTTGGTGCTTTGCCTTCTTGTTTTCAGTTTCAGAGAGTGAGGTATTACGGGTTACGGGTTACGGGTTATGGGCTGAAATGGCCGACCCACGTAATCAGATTAACATTGTTATTTTTAATTTGAAAACTTCTCTTCTGATCACTACCATGGCCAGAAAGAAGTTGGATCTCACATACATTACCAGTGACTCAAAGAGGAAGACAACGTTAAAGAAAAGAAAACATGGTTTGATCAAGAAAATGAATGAAATTAGCACCCTTTGTGGGATTGAAGCATGTGCCATAATCTATTCTCCAAATGATCCTCAGCCAGAGGTTTGGCCATCTGAGTCAGAAGTTCAAAGGGTGCTTTCCAAGTTCATGGAAATGTCTGAGCAGAAACAAAGCAGAAAGATGTTGAATCAGGAGAGCTTATTGAAGCAAATAATCATTAAAGGCCAACAACAGTTGACAAGACAGAGGAATGAGAACAGGAAGAAAGAAATGACTCATCTTATGTTTCAGTACTTGAGTGTTGGGAGGGTTTTTGACAATCCTAGTTTGATAGATTTGAATGATCTCTCATGGCTGATTGATCAGAACCTGAATGAAATAAAAAAGAAGATGACTATGATCCAAATCCAAGAAGTATCTCCGGTGACTGAAAATGGGAGAGAGCATGGATACATGCATCATCATGTTCAAGGGCTAGAGAGCAAGATAGACATCATTCAGAAGTAA 801 0.4157 MLPASNCRSPPRRELEGGGDSLLWVSCVWCFAFLFSVSESEVLRVTGYGLWAEMADPRNQINIVIFNLKTSLLITTMARKKLDLTYITSDSKRKTTLKKRKHGLIKKMNEISTLCGIEACAIIYSPNDPQPEVWPSESEVQRVLSKFMEMSEQKQSRKMLNQESLLKQIIIKGQQQLTRQRNENRKKEMTHLMFQYLSVGRVFDNPSLIDLNDLSWLIDQNLNEIKKKMTMIQIQEVSPVTENGREHGYMHHHVQGLESKIDIIQK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01625 266 Gene3D - 90 171 IPR036879 GO:0003677|GO:0046983
Phco11g01625 266 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 86 128 IPR002100 GO:0003677|GO:0046983
Phco11g01625 266 PRINTS MADS domain signature 79 99 IPR002100 GO:0003677|GO:0046983
Phco11g01625 266 PRINTS MADS domain signature 99 114 IPR002100 GO:0003677|GO:0046983
Phco11g01625 266 PRINTS MADS domain signature 114 135 IPR002100 GO:0003677|GO:0046983
Phco11g01625 266 SUPERFAMILY SRF-like 79 170 IPR036879 GO:0003677|GO:0046983
Phco11g01625 266 SMART madsneu2 77 136 IPR002100 GO:0003677|GO:0046983
Phco11g01625 266 CDD MADS_SRF_like 78 161 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phco11g01625 266 ProSiteProfiles MADS-box domain profile. 77 127 IPR002100 GO:0003677|GO:0046983
Phco11g01625 266 PANTHER MADS BOX PROTEIN 79 230 - -
Phco11g01625 266 FunFam agamous-like MADS-box protein AGL80 89 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01625 Phco-Chr11 12497870 12500444 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco11g01625 SRF-TF 3.1e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01625 11 12497870 12500444 Phco11g01625 11 12497870 12500444 ECH