Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01622 ATGGCTAGAAAGAAGGTCGACCTTACCTTCATAACCAAAGCCTCAAAGAGGAAGGCAACCTTCAAGAAAAGGAAAAATGGTTTGATAAAAAAGATTGGTGAAATCAGCATCCTTTGTGGGATTCAAGCATGTGCTATAATCTATACCCCGGATGAGCCTGATCAGCCAGAGGTTTGGCCATCTGAGGAGGGAGTTGAGAGTGCTATTTCCAGGTTCAGGAGTGTGTCTGAACTGGAGCAAAGCAAGAAAATGTTCTGTCAGGAAAGCTTCTTGAGGCAAAGAATTGTGAAAGTCCAAGAGCAGCTGAAGAAAGTGAGGAATGAGAATAGGAAGAAAGAGATTAACCATCTGATTTCTCAATACATCACTGTTGGGAACAACCTGGAGAGTGCCAACATCATTGACCTCAATGATATCTCATTCTTGGCTGATCAGTGCTTGGAGGACATCACAAAGAAAATCATTGCTCGCAAAGCCCAAATGGTGACACCAGCTGTAGCTGAAAATGGAGGACAAATTGTGACTCATGGAGAACAAGCACAAGTGAATCATGTCCAAGGGCCTTACACCGATGTTGATGCCATCCAAAACCTGAATTGGTCTACTGATATCATCAATGCTGGTGCTGCCAATGAGATGTTAGCATTGGAAGATGTTAATGTCCAAAGTGGTTGGCTTAACCAATATCTCCCTTGA 696 0.431 MARKKVDLTFITKASKRKATFKKRKNGLIKKIGEISILCGIQACAIIYTPDEPDQPEVWPSEEGVESAISRFRSVSELEQSKKMFCQESFLRQRIVKVQEQLKKVRNENRKKEINHLISQYITVGNNLESANIIDLNDISFLADQCLEDITKKIIARKAQMVTPAVAENGGQIVTHGEQAQVNHVQGPYTDVDAIQNLNWSTDIINAGAANEMLALEDVNVQSGWLNQYLP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01622 231 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Phco11g01622 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco11g01622 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco11g01622 231 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Phco11g01622 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Phco11g01622 231 Coils Coil 88 115 - -
Phco11g01622 231 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Phco11g01622 231 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Phco11g01622 231 PANTHER MADS BOX PROTEIN 3 127 - -
Phco11g01622 231 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Phco11g01622 231 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01622 Phco-Chr11 12475240 12476072 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco11g01622 SRF-TF 2.2e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01622 11 12475240 12476072 Phco11g01622 11 12475240 12476072 ECH