Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01621 ATGACTAGAGCCAAGATTGAACTTGCTTACATAACAGATCCTGCAAAGAGGAAGGCAACCTTTAAGAAAAGAAAGAATGGTTTGATGAAAAAGATCAGTGAAATCACTGTCCTATGTGGGATTGATGCATGTGCTGTAGTTTATAGTCCTGATGTGCCTAATAAGCCAGACATTTGGCCATCTGAATCTGGAGCCAGGAGTGTGATTTCCAAGTTCAATGGTGTGTCTGAGGCTGAGAAAACCAAGAAAATGTTCTGCCAAGAGAGCTTTATAAGGCAGAGAATTGACAAAAGCCAAGAACAGCTGAAGAAACTAAAGAATGAAAATAGGAAGAGAGAGATTAGCCTTCTTATGTGTGAATACCTCACTCATGGGAGCAACAACCTTGACAGCAACAACATGAATTATCTGAAAGATTTCTCCTTTTTCACTGATCAAAACTTAGATGAAATTAGAAACAAAATCACTGTGCACCAAGCACAAGAGGAGACACCAGTGATTATGACTGCACGTGAGCAAGCACAGGTTCAAGGGCGTGGGACCAATTTTTCCAGAAAAAAAAAGCTGAATTAG 573 0.3997 MTRAKIELAYITDPAKRKATFKKRKNGLMKKISEITVLCGIDACAVVYSPDVPNKPDIWPSESGARSVISKFNGVSEAEKTKKMFCQESFIRQRIDKSQEQLKKLKNENRKREISLLMCEYLTHGSNNLDSNNMNYLKDFSFFTDQNLDEIRNKITVHQAQEETPVIMTAREQAQVQGRGTNFSRKKKLN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01621 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Phco11g01621 190 Coils Coil 88 115 - -
Phco11g01621 190 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Phco11g01621 190 PANTHER MADS BOX PROTEIN 3 157 - -
Phco11g01621 190 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Phco11g01621 190 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Phco11g01621 190 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Phco11g01621 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco11g01621 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco11g01621 190 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phco11g01621 190 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01621 Phco-Chr11 12468221 12468950 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco11g01621 SRF-TF 2.7e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01621 11 12468221 12468950 Phco11g01621 11 12468221 12468950 ECH