Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01620 ATGACAGGGAGAAAGGTGAAACTGGCATTCATAGCCAATGATTGTGCCAGGAGGGCATCCTATAGAAGAAGGAAGAAGTCAATGTTGAAGAAGATTAAAGAACTGAGCACCCTTTGTGGAGTAGAAGCATGTGCCATAGTGTATAGCCCCTTTGATCAAGAGCCACAGATTTGGCCATCCGAATCAGGTGTCCAAGATGTGGTTGAAAAGTTCAGAACCATGCCTGAATGGAAGAAGCACAAGATGGGGAACCAGGAGAGTGTCATGGAAAAAAGTATTGTGAAGGGTAAAAGGAAGATTAGGAAACTTGAGGAGGAGAATAAGGAAATGGAGATTACCATGTTCATGTTTCAATGCCTTAATTCGAGTAGGGTTCAGCCTCAACATCATATGACCTTGGCAGATTTGAATCTTCTTTCATCAGTGATTGAACAGAAATTGAACGACATTAGTGGAAGATTGGAATTTACAAATGTTACTGAGGCACCATACCAACCCCAGATACAACCATTTGTAGATACTAATCTTAAACTCTAA 537 0.4097 MTGRKVKLAFIANDCARRASYRRRKKSMLKKIKELSTLCGVEACAIVYSPFDQEPQIWPSESGVQDVVEKFRTMPEWKKHKMGNQESVMEKSIVKGKRKIRKLEEENKEMEITMFMFQCLNSSRVQPQHHMTLADLNLLSSVIEQKLNDISGRLEFTNVTEAPYQPQIQPFVDTNLKL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01620 178 Coils Coil 93 113 - -
Phco11g01620 178 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
Phco11g01620 178 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Phco11g01620 178 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phco11g01620 178 PANTHER MADS BOX PROTEIN 5 124 - -
Phco11g01620 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Phco11g01620 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco11g01620 178 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Phco11g01620 178 FunFam agamous-like MADS-box protein AGL80 13 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01620 Phco-Chr11 12454816 12455352 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco11g01620 SRF-TF 8.8e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01620 11 12454816 12455352 Phco11g01620 11 12454816 12455352 ECH