Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01618 ATGTCCCGAAGAAAGGTGCAACTCACACTCATAGCCAATAATTCAGATAGGAAGGCATCATTTATCAAAAGGAAGAAGTCATTGCTGAAGAAGACGGAGGAAATCAGCACCCTTTGTGGTGTTGAAGCATGCACAATAGTTTATGGCCCTTATGGTCCTGAGGCAGATGTTTGGATATCCAAATCGGGTGTTCAAAATGTGGTGGAAAGGTTCAGGAATACATGTGAGCACAACAAGAAGATGGCGACCCAAGAGAGTTTTCTTTCAGAAAGAATCGCCAAGGGTAGAGAGAAGATGAAGAAACATGTTAGGAGCAACCAAGAGAAGGAGATGACCATGTTCATGTTTCAGTGCCTTAAGAATGGGAGGGTTGAGCTTCACAATAACATGACCACAGATGATTTGAATGTTCTTTCATCAGTGATTGAAAACAAGCTGAGGGACATTAATATAAGGATGGAAACTGTGAATGTTACTGAGATGCCACCAAACCAACCCCAGATGGAACTACCAGCACTACCAGTAGCAGCAGCACCTGAAGGCATCACACCACCAAATCATGGCGATGGGACATATATGAATGCTAATGACCCCTTGCAAAGCCAGTGGTTTATGGAGTTGCTTAATGATAATGGTGAGGATGAGACAATAAAGCCTTCATTTGGAGATCCTAATCTCCCACCACTCTAA 690 0.4304 MSRRKVQLTLIANNSDRKASFIKRKKSLLKKTEEISTLCGVEACTIVYGPYGPEADVWISKSGVQNVVERFRNTCEHNKKMATQESFLSERIAKGREKMKKHVRSNQEKEMTMFMFQCLKNGRVELHNNMTTDDLNVLSSVIENKLRDINIRMETVNVTEMPPNQPQMELPALPVAAAPEGITPPNHGDGTYMNANDPLQSQWFMELLNDNGEDETIKPSFGDPNLPPL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01618 229 PANTHER MADS BOX PROTEIN 3 127 - -
Phco11g01618 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco11g01618 229 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Phco11g01618 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Phco11g01618 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco11g01618 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco11g01618 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco11g01618 229 FunFam Agamous-like MADS-box protein AGL80 13 96 - -
Phco11g01618 229 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Phco11g01618 229 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Phco11g01618 229 CDD MADS_SRF_like 3 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01618 Phco-Chr11 12443555 12444244 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco11g01618 SRF-TF 2e-14 No_clan