Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01617 ATGGACACCGACATTTCCCGGTGGGTGATGGAGTTCCTCCTCCGCAGTTCCGTCCCCGATTCCCTAATCCAAAGAACTCTAATCGCCCTTCCTCTCTCCGGTGCCGACTCCCGCCTCAAGAAGACCCTTCTCCTCCGCACTCTCCGCACCCTCCTCCTCAAAGCCTCCCTCTCGGAAACCGCACTCCAAATCCTCGAACACCTCGAAGACCTGGACGGTGCCTCCGCCTCCGCTGCGCGCCGCCGCGCGTACCTCGCCGTCGCCGTCGAGTGCACTGTCAAGTACATCGCCGCCGCCCCCGATGACGCCGACGGGGAGTTCTCTGGCGCCGTGAACCGGATCTGGCGCGGCCGCGTGGCGGCGCTGGAGGCGCGCCGGAGCAGGCTGGTGTCTGGCGAGCTGGCGCGGTGGCGGGACGACTTGGAGGCGGCGCTTGGGGATTCTAGGGCTTGCGAGAGGCTGGCGGATTTGAATAGCAGGAGAGAGGCGATGAACGAAGTGAGGGCGTATTTGAAAGAAGCGTGGGAATCGATGGGTCCTTCGTTCTTGGAATCGGTTGCGGCGATGTCGAAGGGTTTAACCCTAGAGAAAGATGCTTTTGTTGTTAGTGGTAAGAAGAGTGACGATGATCATGAGAATGACAATGATGCATGCATGGAGGATGTAGCAATGCATGATGAGAATCAGGGCACTCAACAATTGGAAGAGAAAATTGATGCGAATCAGGAAGTGGGTGGGTGTGACTTTCCGCTTGAGAGAGATAAAGTAGTAATTCAGAAGCAGAATCTTCGGGTTAAACACAAGCACTCTGCACTTCGTGCATGTCATAGGGGAGTTAAAATATCTGGTTCAGAGGAAGTGGAGTCTGCAAAATCATGGAGCAAACATGATTCTATTCCTACTGAAGTCAGAAAAGTTAGGGAATCCCTTAAATCAAGTTCTTATGAGTTAAGAGCATTGGTCAATGATCCTCTTCCTGATGCATTGCGTACATCTGAAGTTGTAAGATCTAAATTGGCAACAAGTGATACAAATATTGAGCCACCTATTGAAAACCAGAGTCCGCATATAGATGTACCAGATCCAGATGTTTGCCAGAGTATTGTACCTTTTCAGCCTAATGATGCCAATCTTGGGAAGAAGTCTTCTGTTCATTGTAGTAACATACATCAGCCCAACTTAATAGAACGGAACAGAAGTGCCCGTACCATTGAGTGGGATGATTCAATAGACAACTCACCACAAGCAAGACAGTCTAGGAGGAGGAAAAGGAGATGGAGTTCGTTGGAAGAGGAGACGCTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCTACAATCAGAAGTTTTTACAGTAACATATTTGACAATAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGATACGATGA 1425 0.5032 MDTDISRWVMEFLLRSSVPDSLIQRTLIALPLSGADSRLKKTLLLRTLRTLLLKASLSETALQILEHLEDLDGASASAARRRAYLAVAVECTVKYIAAAPDDADGEFSGAVNRIWRGRVAALEARRSRLVSGELARWRDDLEAALGDSRACERLADLNSRREAMNEVRAYLKEAWESMGPSFLESVAAMSKGLTLEKDAFVVSGKKSDDDHENDNDACMEDVAMHDENQGTQQLEEKIDANQEVGGCDFPLERDKVVIQKQNLRVKHKHSALRACHRGVKISGSEEVESAKSWSKHDSIPTEVRKVRESLKSSSYELRALVNDPLPDALRTSEVVRSKLATSDTNIEPPIENQSPHIDVPDPDVCQSIVPFQPNDANLGKKSSVHCSNIHQPNLIERNRSARTIEWDDSIDNSPQARQSRRRKRRWSSLEEETLRAGVKMFGEGNWATIRSFYSNIFDNRSGVDLKDKWRNMIR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01617 474 SMART sant 422 474 IPR001005 -
Phco11g01617 474 PANTHER MYB TRANSCRIPTION FACTOR 1 474 - -
Phco11g01617 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 418 474 IPR017930 -
Phco11g01617 474 SUPERFAMILY Homeodomain-like 420 473 IPR009057 -
Phco11g01617 474 Gene3D - 414 474 - -
Phco11g01617 474 MobiDBLite consensus disorder prediction 406 425 - -
Phco11g01617 474 CDD SANT_TRF 430 474 - -
Phco11g01617 474 ProSiteProfiles Myb-like domain profile. 418 473 IPR001005 -
Phco11g01617 474 Pfam Myb-like DNA-binding domain 423 472 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01617 Phco-Chr11 12432903 12435903 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco11g01617 Myb_DNA-binding 2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01617 11 12432903 12435903 Phco11g01617 11 12432903 12435903 ECH