Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01612 ATGGCCACACAGACGCAAGATTCACCTTCAAACCCTAACCCTAATCTCAATGCTACATCATCAACGGCGTCTGCTTCGTTGTTCTTTCTCGGCGCCGGTGCTTCTGCCGCTCCCGTCGCCGGCTCCGGCGAGTCACACTCACACCACCGGAGAGCACTGTCGGAGGTCAGTTACCGGCTTCCGGACGACATGATGGACCTCTCGCCGTCGGATCCGTTCAACGGCGGATCCTCGACGGCGAGTCTAGAGGAGATCGGATCCGAGGACGACCTCTTCTCCACCTACATTGACGTTGAGAAGCTCGGCGGTGGCGCGAACGGTGCCGGCCGCGGTGGAAACGGATCGGATCAGAGCGGTTACGGAAACGGCACCGGTACTAGCGGACACAACGACGGCGAGAAGAGTCCGAGCGCCGAAGAGGCGAGGCCGAGACACCGGCACAGTAGCTCTGTCGACGGTTCCTCGTCGACAAGCATGTTCGGAGAGATCATGGAAGCGAAGAAAGCAATGCCTCCTGATAAGCTCGCGGAACTTTGGAACATTGATCCAAAGCGGGCCAAGAGAATACTAGCTAATCGGCAATCTGCTGCGCGGTCAAAAGAAAGAAAGGCACGCTATATACAAGAACTAGAGCGCAAAGTTCAGACCCTTCAGACCGAGGCAACAACACTTTCTGCCCAACTCACATTGTACCAGAGGGATACAACTGGTCTGAGTAGTGAAAATACCGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAGGCACAACTTCGTGATGCTCTTAATGATGCATTGATGAAGGAAGTTGAGAGGCTTAAGATTGCTACTGGCGAGGCATTAAACAACCCCTCTGAGTCTTTCAATATTGGAATGCACCAGATGCCATTTGCGGGGTCAAATTTCTTTTCAATCCCACCACATTCAGGTCCTCCTAGTCACCAGAATATGCAGTTGGCTCCATTTGGTCTCTCCCAATCTAGCATGCCAGCTCATCAGCTGCATCAAACAAATTCTCACCAAATGTCAGATATATTGCAAAACGACCAGCTTGGTCGTTTGCAGGGACTTGACATTAGTAGCAATGGATCACCATTTGTGAAATCTGAAGGCCCCTCAATATCTGCAAATGAGAGTAGCACTAAGTTTTGA 1152 0.52 MATQTQDSPSNPNPNLNATSSTASASLFFLGAGASAAPVAGSGESHSHHRRALSEVSYRLPDDMMDLSPSDPFNGGSSTASLEEIGSEDDLFSTYIDVEKLGGGANGAGRGGNGSDQSGYGNGTGTSGHNDGEKSPSAEEARPRHRHSSSVDGSSSTSMFGEIMEAKKAMPPDKLAELWNIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQAQLRDALNDALMKEVERLKIATGEALNNPSESFNIGMHQMPFAGSNFFSIPPHSGPPSHQNMQLAPFGLSQSSMPAHQLHQTNSHQMSDILQNDQLGRLQGLDISSNGSPFVKSEGPSISANESSTKF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01612 383 MobiDBLite consensus disorder prediction 36 86 - -
Phco11g01612 383 MobiDBLite consensus disorder prediction 356 383 - -
Phco11g01612 383 MobiDBLite consensus disorder prediction 1 20 - -
Phco11g01612 383 CDD bZIP_plant_RF2 185 234 IPR044759 GO:0003700|GO:0006355
Phco11g01612 383 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 245 IPR004827 GO:0003700|GO:0006355
Phco11g01612 383 Gene3D - 183 236 - -
Phco11g01612 383 MobiDBLite consensus disorder prediction 133 149 - -
Phco11g01612 383 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 370 - -
Phco11g01612 383 MobiDBLite consensus disorder prediction 111 132 - -
Phco11g01612 383 SMART brlzneu 180 244 IPR004827 GO:0003700|GO:0006355
Phco11g01612 383 MobiDBLite consensus disorder prediction 105 157 - -
Phco11g01612 383 Coils Coil 200 227 - -
Phco11g01612 383 FunFam probable transcription factor PosF21 183 236 - -
Phco11g01612 383 Pfam bZIP transcription factor 184 242 IPR004827 GO:0003700|GO:0006355
Phco11g01612 383 SUPERFAMILY Leucine zipper domain 184 235 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01612 Phco-Chr11 12408193 12410984 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco11g01612 bZIP_1 3.9e-09 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01612 11 12408193 12410984 Phco11g01612 11 12408193 12410984 ECH
Phco11g01612 11 12408193 12410984 Phco3g00466 3 3468488 3470953 PCT