Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01605 ATGGATACATGTTTCACCAAGAGGGATACACCGAGGGGTGAGACAAGCGAGTCTAAGTCACAGTCACAGCGAGACAGCCCCGTGAAGTGCGGTGGAATTTTGGATTTTGTATCAATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCCTCTACGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCTTGAGCCATTATCCACATACGAGAATTCAGTTTTCTGCAGCAAATTCCACCACCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAATAAGCCTATCCACTGTGGATGCACGGTATCTAGATCTTTGTTCGAGCATCTTGACTATGGTGGTATAGGATGTGTTAGCTGTGTAAATACTAGCCAACTTAGTACGAAGAGGAATATTGAAAATCCAAATGGGCCTGTTTCATTGATAAAAAATAATGCAAGTGATCGGCCTTCTTCTCATTCTGAGGGAAGACTGTTTGCGCGTGGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTATTGAAGCTAGTGAATCCAGCCGATGGAATAATGCTCAAAGAGATGGCATCATTTCATGTCATGGGCACAACAACCAAGAAGCCAAGTGTTCATTTGGGGAAGGAGACATTGGTTTTTCAAATGTGATGAAGCCATCTGTTCAGTCATTAACATTTGCTACATTAGAAAATAATAGGTCACCATGGGAGATTAAAAACATCCATGAAGCAAATGTGCAGCCATCGTTGGGTATGTACCTGGGAAATGCATCAGGGAACAACTCTGTCCTGCCCTGTGCTGGAGAGGCAGTGGAAGGAAGACTAGAGGGAAAAACATCTCCTCCCTTTCATCAAGGGCAAAGGTCTCGCCCTATATTTCCCAAACCGTTGAAGAGTGGGCTTACCATGAATGTGGAAATAGACAAAGGTACAATTTCTCAATCACGTGTTGCTCGGCCACCTGCAGATGGCAGAGGAAAGAATCAGTTACTTCCTCGATACTGGCCGAGGATTACTGATCAAGAGTTGGAGCGACTGTCTGGAGATTTGAAATCCACCGTTGTGCCATTATTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTTCCAAAAGCCTGCGCTGAGGCATATTTCCCTTCCATTTCACAATCTGAGGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAACGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAATAGTAGAATGTATGTATTGGAGGGTGTGACTCCTTGCATACAGGCCATGCAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGAGGCAAACTTGTAATGGGTTTCAGAAGGGCATCAAATTCTGCAGATACACAGGATACCTCCGCATCTGCTCAATCTAATTCAGCAAAGGGAACCACCTCTGCTGGAACTGAGAATCTGCCATCAGGAAGTAATCATGCCAATCTTCTCCTTTCAATGAAGGGGGGGGATGTGGAACCTCACTTAAATGGACAAAGAGAACATCTACTTTTGGGTACTGGAACTTCCGAGTTGCTTATAACTGAAAATAATGGGATGACAAACAATAGTTCACTACAACAAAAAAATTTGGTTTTAGAGAAGAAGAAGACTCGTAATATTGGGCCTAAAAGTAAAAGGTTGCTTATTGACAATGAAGATGCTAGGGAGTTAAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTGACAATTGAGGACCAAGTCTTTGAAGAATACGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACTTGTTCTTCTGGTGTGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCAATTGATGCTCTTCTTCCTGCCAATTGGACATGTTTTGACAATGCTTGGGATTCAATAAGATGTTCATGCACTGTACCTGAAGAGCTAAGTTCAGGGGAATTAGAAAATCTTTTGAAAACCGACAAAGATTTTAAAAAGCGACGAACTGATGAAAAGAGCAAGTCAATCCAAGAACACGAGGCATCTGGCTTGGAAGCTCTTGCCTGTGCAGCAGCCCTAGGAGAAAATCTTGTTGACACTGCCGAATCATCAGCTGGAGCCACCACCAAGCATCCTAGACACCGTCCTGGCTGCTCTTGCATTGTGTGCATCCAGCCCCCAAGTGGTAAGGGGAGACACAAGCCGACATGCACATGCAATGTCTGCTTGACCGTGAAGCGCCGGTTCAAAACCCTCATGCTTCGAAAGAAGAAACGGCAATCCGAACGCGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTCCAAAAAGATGAGTCAGATACCAATGAAACATCAAGAGATGATGCAACTCAGTCGGAGAAAGAGGTAGTAGGACTAAGCAGAAGTCAAGCTGAAGGGGGTGAGTCTAGTGCTGCTGGACAAATTGATCTGAATTCTCATCCCAACCGTGAAGACATGCAAGTGGATATCACTGCAGTTCTGTTTTGCGAAACAGACCCTTCTACAGTACGGGAATATATGAACCAAAATGCTCCAAGAAGCTATAACAATGAATTGCAGAATGGTGAAAATTCTTCTTTGCACACTTCTCAATCCAATGGAGAAGGTCAGAGACACTTCTCTGATCTAAGAAGCTTTGCATCCATTATATGGAACCAAGAAAGAAGAGATGAGGAAGACAGTGAACCCAACCAAAACCAAAACAATCTTTGTTAA 2850 0.4389 MDTCFTKRDTPRGETSESKSQSQRDSPVKCGGILDFVSMGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDILEPLSTYENSVFCSKFHHQQTGWRECNFCNKPIHCGCTVSRSLFEHLDYGGIGCVSCVNTSQLSTKRNIENPNGPVSLIKNNASDRPSSHSEGRLFARGVDEGKLMQFCKIIEASESSRWNNAQRDGIISCHGHNNQEAKCSFGEGDIGFSNVMKPSVQSLTFATLENNRSPWEIKNIHEANVQPSLGMYLGNASGNNSVLPCAGEAVEGRLEGKTSPPFHQGQRSRPIFPKPLKSGLTMNVEIDKGTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVTFSRIDPGGKLVMGFRRASNSADTQDTSASAQSNSAKGTTSAGTENLPSGSNHANLLLSMKGGDVEPHLNGQREHLLLGTGTSELLITENNGMTNNSSLQQKNLVLEKKKTRNIGPKSKRLLIDNEDARELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKEQWAQCDDCSKWRKLPIDALLPANWTCFDNAWDSIRCSCTVPEELSSGELENLLKTDKDFKKRRTDEKSKSIQEHEASGLEALACAAALGENLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCLTVKRRFKTLMLRKKKRQSEREAEAAQKDQVLQKDESDTNETSRDDATQSEKEVVGLSRSQAEGGESSAAGQIDLNSHPNREDMQVDITAVLFCETDPSTVREYMNQNAPRSYNNELQNGENSSLHTSQSNGEGQRHFSDLRSFASIIWNQERRDEEDSEPNQNQNNLC 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01605 949 Gene3D - 355 482 IPR015300 -
Phco11g01605 949 MobiDBLite consensus disorder prediction 795 832 - -
Phco11g01605 949 Pfam B3 DNA binding domain 377 477 IPR003340 GO:0003677
Phco11g01605 949 MobiDBLite consensus disorder prediction 156 171 - -
Phco11g01605 949 MobiDBLite consensus disorder prediction 1 27 - -
Phco11g01605 949 MobiDBLite consensus disorder prediction 477 512 - -
Phco11g01605 949 MobiDBLite consensus disorder prediction 891 916 - -
Phco11g01605 949 MobiDBLite consensus disorder prediction 1 19 - -
Phco11g01605 949 CDD B3_DNA 375 476 IPR003340 GO:0003677
Phco11g01605 949 MobiDBLite consensus disorder prediction 156 175 - -
Phco11g01605 949 SUPERFAMILY DNA-binding pseudobarrel domain 375 476 IPR015300 -
Phco11g01605 949 Gene3D - 642 697 - -
Phco11g01605 949 MobiDBLite consensus disorder prediction 294 314 - -
Phco11g01605 949 ProSiteProfiles B3 DNA-binding domain profile. 377 478 IPR003340 GO:0003677
Phco11g01605 949 ProSiteProfiles Zinc finger CW-type profile. 639 689 IPR011124 GO:0008270
Phco11g01605 949 Pfam CW-type Zinc Finger 644 686 IPR011124 GO:0008270
Phco11g01605 949 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 42 901 - -
Phco11g01605 949 SMART B3_2 377 478 IPR003340 GO:0003677
Phco11g01605 949 MobiDBLite consensus disorder prediction 792 860 - -
Phco11g01605 949 FunFam B3 domain-containing transcription repressor VAL1 355 482 - -
Phco11g01605 949 MobiDBLite consensus disorder prediction 833 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01605 Phco-Chr11 12325207 12332559 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco11g01605 B3 1.5e-17 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01605 11 12325207 12332559 Phco11g01605 11 12325207 12332559 ECH
Phco11g01605 11 12325207 12332559 Phco3g00469 3 3477751 3484508 PCT