Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01597 ATGGTTATGGTACTAATACAGGAACATATGATGACTGACAAAGTTTACTCCAAATTCAATTGCCAATATATTATTCCTTCCAGAAAACAACTCTCCATGAAGTTCCTTTCTACTTCAGTCACTTTTCTTTTTGTCATAGTGATTCTTTTCCCTTTGGTTATTGGTGATCTAAGTTCAGATAAGCAAGCCCTTCTTGATTTTGCTAATGCTATCCCCCACCGCCGAAACCTTATGTGGAATCCATCGACCTCAGTCTGTAAATCTTGGGTAGGCATCACTTGCAATGAAAATAGAACTCGTGTTGTTAATGTTCGGCTTCCTGGAGTAGGACTAGTTGGCACCATCCCATCCAACACACTTGGCAAGCTTGATGCTGTGAAAATTATTAGCCTTCGCTCCAACCTACTCAGTGGAAATCTCCCTGCTGACATTGATTCTCTTCCTTCTCTTCAGTATCTCTACCTCCAGCATAACAACCTTTCTGGTGATATACCTGCCTCATTGTCTCCCCAACTTGTTGTACTTGATTTGTCATATAATTCCTTCTCTGGTAGCATTCCAGAGACATTTCAAAATTTTTCAGAATTAACGAGTTTGAATCTCCAAAACAACTCCCTATCCGGACAGATACCTAATCTCAATGTAACTCAGCTCAGGCTTTTGAATTTAAGCTACAACCATTTGAATGGCTCTATTCCTAAAGCTCTTCATATTTTTCCAAATTCTTCCTTTGAAGGAAACACACTTTTATGCGGACCCCCTCTAAAGCCATGCTCTGGGGTTCCTCCTACACCTTCTCCTGCCTTGACTCCACCTCCATCATCAACTCCAGGGAGACAAAACTCAAAATATAAGTTGAGTAAAATAGCCATCATTGCAATTGGTGTTGGAGGAGCTGTGGTGTTATTCTTTATTGCTCTTGTTGTTGTTATTTGCTGTTTAAAGAAAGACGGCAGAGGCTCCAATGTGATTAAAGGGAAGGGCTCTAGTGGTGGCAGGGGTGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTTCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGCAGTTCTTATAATTTTGATCTTGAGGATTTGCTGAGAGCTTCAGCCGAAGTCCTGGGAAAGGGTAGTTATGGTACTGCCTATAAGGCCATACTAGAGGAGTCAATGACTGTTGTGGTGAAAAGATTGAAAGAAGTTGTGGTAGGGAAGAAGGACTTTGAACAGCAGATGGACTTTATTGGAAGAGTTGGACAACACTCAAATGTCGTGCCCCTTCGCGCTTATTATTATTCAAAAGATGAAAAGCTTTTGGTTTATGACTATGTCCCTGCTGGCAACCTACACACACTCTTGCACGGTGGAAGGACAGGTGGAAGAACTCCCTTAGACTGGGAGTCCCGAATAAAAATCTCCCTTGGAAGTGCCAAAGGACTTGCACACATTCATTCTGTTGGTGGTTCAAAATTCACACATGGAAACATTAAGTCCTCAAATGTCCTCCTCAACCAAGATAATGATGGCTGCATTTCTGATGTTGGCCTCGCCCCCCTTATGAACGTTCCTGCTACCCCTTCTAGAGCTGCCGGTTATCGTGCTCCAGAGGTGGTTGAAACCCGTAAACACTCTCATAAATCAGATGTGTACAGCTTCGGTGTCCTCCTTCTTGAGATGCTTACTGGGAAGGCTCCTCTCCAATCTCCTGGACGTGATGACATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAAGAATGGACTGCCGAAGTTTTTGATGTTGAGCTTATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAGATGTTGCAGATAGCCATGGCCTGTGTGGCAAAGATGCCAGATATGAGACCTAGTATGGATGAAGTAGTAAGACTGATCGAAGAGATCCGGCAATCTGACTCAGAGAATCGACCATCTTCTGAAGAAAATAAATCTAAGGACTCAAATGTTCAGACTCCATAG 1998 0.4294 MVMVLIQEHMMTDKVYSKFNCQYIIPSRKQLSMKFLSTSVTFLFVIVILFPLVIGDLSSDKQALLDFANAIPHRRNLMWNPSTSVCKSWVGITCNENRTRVVNVRLPGVGLVGTIPSNTLGKLDAVKIISLRSNLLSGNLPADIDSLPSLQYLYLQHNNLSGDIPASLSPQLVVLDLSYNSFSGSIPETFQNFSELTSLNLQNNSLSGQIPNLNVTQLRLLNLSYNHLNGSIPKALHIFPNSSFEGNTLLCGPPLKPCSGVPPTPSPALTPPPSSTPGRQNSKYKLSKIAIIAIGVGGAVVLFFIALVVVICCLKKDGRGSNVIKGKGSSGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKKDFEQQMDFIGRVGQHSNVVPLRAYYYSKDEKLLVYDYVPAGNLHTLLHGGRTGGRTPLDWESRIKISLGSAKGLAHIHSVGGSKFTHGNIKSSNVLLNQDNDGCISDVGLAPLMNVPATPSRAAGYRAPEVVETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPSMDEVVRLIEEIRQSDSENRPSSEENKSKDSNVQTP 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01597 665 MobiDBLite consensus disorder prediction 331 345 - -
Phco11g01597 665 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 446 653 - -
Phco11g01597 665 Pfam Protein kinase domain 373 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01597 665 Gene3D Ribonuclease Inhibitor 213 259 IPR032675 -
Phco11g01597 665 ProSiteProfiles Leucine-rich repeat profile. 195 217 IPR001611 GO:0005515
Phco11g01597 665 Gene3D Transferase(Phosphotransferase) domain 1 446 664 - -
Phco11g01597 665 MobiDBLite consensus disorder prediction 324 345 - -
Phco11g01597 665 FunFam Leucine-rich repeat receptor-like protein kinase 170 258 - -
Phco11g01597 665 Gene3D Ribonuclease Inhibitor 57 212 IPR032675 -
Phco11g01597 665 ProSitePatterns Protein kinases ATP-binding region signature. 376 407 IPR017441 GO:0005524
Phco11g01597 665 MobiDBLite consensus disorder prediction 640 665 - -
Phco11g01597 665 PANTHER OS05G0588300 PROTEIN 43 653 - -
Phco11g01597 665 SUPERFAMILY Protein kinase-like (PK-like) 374 647 IPR011009 -
Phco11g01597 665 Pfam Leucine rich repeat 114 160 IPR001611 GO:0005515
Phco11g01597 665 ProSiteProfiles Protein kinase domain profile. 370 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01597 665 Pfam Leucine rich repeat N-terminal domain 58 95 IPR013210 -
Phco11g01597 665 MobiDBLite consensus disorder prediction 640 656 - -
Phco11g01597 665 Gene3D Phosphorylase Kinase; domain 1 338 445 - -
Phco11g01597 665 MobiDBLite consensus disorder prediction 261 280 - -
Phco11g01597 665 FunFam Leucine-rich repeat receptor-like protein kinase 59 169 - -
Phco11g01597 665 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515
Phco11g01597 665 SUPERFAMILY L domain-like 59 258 - -
Phco11g01597 665 FunFam pollen receptor-like kinase 1 338 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01597 Phco-Chr11 12247328 12249720 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco11g01597 Pkinase 2.9e-36 CL0016