Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01595 ATGTATCTTTCAAAGAGTTTCAAGCATGAAGTTGTTGTCATCCTGTGGTTTTGCTGCTATTTGCTACATGCAGCTGGGCAGAATAACATCACTAATAGTGTTGAAGTTGAAGCATTGAGAGCCATCAAGAGTAGTTTGATTGATCCTAATGGAAATTTGAGCAATTGGAATCATGGAGACCCATGTACATCAAGGTGGAAAGGAGTTTTGTGCTTCAATGAAACACAAGAGGATGGCTATCTGCATGTTGAAGAATTGCAATTGCTGAGTTTGCAACTGTCTGGAACCTTGGCACCAGATCTTGGCAAATTAACGTACATGAAAAGATTGAACTTTATGTGGAACAACATAAGTGGCAGTATTCCGAAGGAAGTTGGCAATATCAAATCTTTGGAACTTTTGCTCCTGAATGGAAATAATTTAACAGGTCCACTACCAGAGGAGATTGGCTATCTTCCAAACCTGGATAGAATACAAATCGATCAGAACCATATATCAGGACCTATACCTACGTCATTTGCAAATCTGAACAAGACAAAGCATTTTCACATGAACAACAACTCACTCAGCGGGCAAATCCCACCAGAGCTTTCCCGATTACCAAATCTTGTTCACCTTCTTCTCGACAATAACAACTTATCTGGATATCTCCCCCTTGAGCTGTACAAGTTGCCAAATTTACTTATCATTCAACTTGATAACAATAACTTTGGAGGAAATAGTATTCCTGATACGTATGCCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAGCTTGCGAGGACCAGTTCCTGACTTAAGTAGGATACCTCGCCTTCTTTATCTCGACCTCAGTTTCAACCTGTTGAATGAATCGATTCCTTCCAATAAGCTTTCTGAAAATATTACCACCATTGATTTATCAAACAACCACCTTACTGGAAATATTCCATCCTACTTTGATGATCTTCCACGTCTTCAGAAGTTGTCACTTGCAAACAATTCATTGAATGGCAATGTTTCTTCCTCCATTTGGTTGAATAAGACTTCAAATGGATCAGAAAACTTTCTTTTGGAGTTGCAAAATAATAGCCTTACAGCCATATCAGGAAGTATTGATCTTCCTCCAAATGTCACAGTTGTGCTTGATGGGAATCCCCTTTGCTCAAACACAACCCTTGTTCAGTTCTGTGGATCTGAAGGTGCTACTGTAACAAATGGCTCATTGACTACAAACTCCAGTTTCTGTCCCCCTCAAGGATGCCCTCCTCCTTATGAGTACTCTGTTAATTGTTTCTGTGCGCTTCCATTGCTTGTTGCCTATCGGCTGAAAAGTCCTGGATTTTCAGACTTTGCTCCATATTTGAATGAATTTGAGACCTACATGACTACTGGTCTTCAATTATCTACTGATCAGCTAGAATATGCTTTTTATTGGCAAGTAGGACCTCGATTGAGAATGGACTTGAAGTTTTTCCCTCTATATGTTAATAGCACTAGCAATCATACTTTCAATAGCAGTGAACTCCTACGGATCACAAGCATGTTCACAGGATGGCTAATTGCAGACAGTGATCTGTTTGGCCCTTATGAACTGATCGGCTTCAATCTTTTGGGTCCTTACAAGGATGAAATTGGAAAGCGTTCAAACTCAAGGATAAGAACAGGTGCACTGGTTGGCATAATTGTAGGGGCAATTGCTTGTGCAGTGACATTATCTGCAATTGTTACCCTTCTTATATTGAGAATCAAATTGAGAGGTTATCATACTGTTTCCAAGCGACGTCAGGCATCTAGGATCTCTATAAAAATTGATGGTGTAAGGGCATTTACTTATGGAGAATTGTCCTCCGCCACTAACAATTTCAGCATATCTGCTCAAGTTGGACAAGGGGGCTACGGGAAGGTTTATAAAGGGACTCTTTCTGATGGCACAGTTGTTGCCATAAAACGTGCACAAGAGGGATCTCTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTTGTTTCTCTAATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCTAATGGCACATTGAGGGATCACCTTTCTGTTACAGCTAAAGAACCCCTGACTTTTGCCATGAGATTGAAGATCGCACTAGGGGCAGCTAAAGGTCTCATGTATCTGCACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTAAAGGCCAGCAACATATTGTTGGACCCTAAGTTTTCGGCGAAAGTGGCTGATTTTGGACTTTCACGTCTTGCCCCAGTTCCAGATATGGAAGGAGTTGTGCCTGGTCATGTATCTACGGTGGTAAAGGGGACCCCGGGTTACCTCGATCCAGAGTACTTCTTAACTCACAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTACTTCTGGAACTTTTGACTGGGATGCATCCTATCTCACACGGAAAAAATATTGTTAGAGAGGTAAATATTGCGTACCAAAGAGGTGTAATATTTTCAATTATTGATGGACGCATGGGGTCTTATCCATCTGAGCAAGTGGAGAAATTTTTGACATTGGCCTTGAAGTGTTGCGAAGATGAGCCAGAGGCTCGGCCTACAATGGCAGAAGTGGTTAGAGAGCTTGAAAACATATGGTATACAACGCCAGAATCAGATACAAAGAGAGCTGAATTTATATCCAGTGATTCTGGCAAAACAGACAGTCACAGTATACCATCTTCATCCTCTGCTTCTGCTATGAAGACTCCTTTTATATCAGGAGATGTGTCAGGTAGTGACCTTGTTAGTGGAGTAGTACCAAGCATCAACCCAAGATAG 2856 0.4097 MYLSKSFKHEVVVILWFCCYLLHAAGQNNITNSVEVEALRAIKSSLIDPNGNLSNWNHGDPCTSRWKGVLCFNETQEDGYLHVEELQLLSLQLSGTLAPDLGKLTYMKRLNFMWNNISGSIPKEVGNIKSLELLLLNGNNLTGPLPEEIGYLPNLDRIQIDQNHISGPIPTSFANLNKTKHFHMNNNSLSGQIPPELSRLPNLVHLLLDNNNLSGYLPLELYKLPNLLIIQLDNNNFGGNSIPDTYANMSKLLKMSLRNCSLRGPVPDLSRIPRLLYLDLSFNLLNESIPSNKLSENITTIDLSNNHLTGNIPSYFDDLPRLQKLSLANNSLNGNVSSSIWLNKTSNGSENFLLELQNNSLTAISGSIDLPPNVTVVLDGNPLCSNTTLVQFCGSEGATVTNGSLTTNSSFCPPQGCPPPYEYSVNCFCALPLLVAYRLKSPGFSDFAPYLNEFETYMTTGLQLSTDQLEYAFYWQVGPRLRMDLKFFPLYVNSTSNHTFNSSELLRITSMFTGWLIADSDLFGPYELIGFNLLGPYKDEIGKRSNSRIRTGALVGIIVGAIACAVTLSAIVTLLILRIKLRGYHTVSKRRQASRISIKIDGVRAFTYGELSSATNNFSISAQVGQGGYGKVYKGTLSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTAKEPLTFAMRLKIALGAAKGLMYLHTEADPPIFHRDVKASNILLDPKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVLLELLTGMHPISHGKNIVREVNIAYQRGVIFSIIDGRMGSYPSEQVEKFLTLALKCCEDEPEARPTMAEVVRELENIWYTTPESDTKRAEFISSDSGKTDSHSIPSSSSASAMKTPFISGDVSGSDLVSGVVPSINPR 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01595 951 Pfam Protein kinase domain 620 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01595 951 Gene3D Ribonuclease Inhibitor 31 296 IPR032675 -
Phco11g01595 951 Gene3D Ribonuclease Inhibitor 297 414 IPR032675 -
Phco11g01595 951 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 694 903 - -
Phco11g01595 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Phco11g01595 951 ProSiteProfiles Protein kinase domain profile. 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01595 951 SUPERFAMILY L domain-like 44 393 - -
Phco11g01595 951 PANTHER RECEPTOR-LIKE PROTEIN 55 42 890 - -
Phco11g01595 951 FunFam Leucine-rich repeat protein kinase family protein 583 693 - -
Phco11g01595 951 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Phco11g01595 951 SMART serkin_6 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01595 951 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Phco11g01595 951 MobiDBLite consensus disorder prediction 909 931 - -
Phco11g01595 951 SUPERFAMILY Protein kinase-like (PK-like) 603 908 IPR011009 -
Phco11g01595 951 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Phco11g01595 951 CDD STKc_IRAK 624 890 - -
Phco11g01595 951 Gene3D Phosphorylase Kinase; domain 1 588 693 - -
Phco11g01595 951 MobiDBLite consensus disorder prediction 901 951 - -
Phco11g01595 951 Gene3D Transferase(Phosphotransferase) domain 1 694 911 - -
Phco11g01595 951 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01595 Phco-Chr11 12183829 12195657 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Phco11g01595 Pkinase 2.5e-48 CL0016