Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01559 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGACTTGAAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTAATTTGTCAACTACACAATGTCACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCGTTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGCATTCCTAGTAAGCAGCCATCAAATTATTTTTGCAAGACGTTAACAGCCAGCGATACCAGTACACATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCAGCTCAGGAACTGATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATTTTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTAGGAATACGTCGTGCCAATAGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCGACTAATAGCTGTTTTACAGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAGTCAGGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTGACAACATTCCCTATGTATCCGTCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGTAGAGATGAAGCAAGTAATGGGCTGATGTGGCTGAGGGGTGGACCAGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGGTGGTATGTTGCCCTGGATGCAGCAGAGAATGGATCCCACTTTACTAGGAAGTGAGCAGAATCAACAGTACCAGGCCATGTTGGCAGCTGGTTTGCAGAATCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTCTGCAACTTCAGCCGCAGCAATCAATTCAACAGTCTGTGTCTTCTGACATTCTGCAGCCACAAGCCCATGTATTGACAGAGAACCTCTCCCAGCACCTACTTCAGAAACCACACAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATTCTTTTCAAGACCCGCTCTTAATTCCAAGTGATCAGCTCCCTCATAGACAACACTCCGGTGTTCCTTCACCGTCATATTCAAAACCTGATTTCTTGGATTCGAGCATGAAGTTCCCTGCTTCAGTTTCCCCTGGACAAAACATGCTCAGTTCACTTTGTCCTGAAGGAAGTGCAAATCTCTTGAATTTATCAAGGAGTGGTCCGTCTTTGCTGAGTGAACAGTTACCTCAACAGCAATGGACTCAAAAGTATCCACCTATGCAGGTCAATGCTTATGGAAGCACTGTGCAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGAAGCCCAAAATTCTACACTCTTTGGTGTCAATATCGATTCATCTGGCCTTCTTCTTCCCACCACAGTCCCTGGTTACAGTACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCTATTTGGTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCATGTTGACCTGCAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCAGTTGGGCGCTCACTTGACATATCACGGTTCAGCAGCTATCATGAACTGCGTGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCGGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTTAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGAGTACTGA 2523 0.4566 MKLSTSGLGQQGLEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESGVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGSRDEASNGLMWLRGGPVDQGLNSLNFQGGGMLPWMQQRMDPTLLGSEQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQPQQSIQQSVSSDILQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSFQDPLLIPSDQLPHRQHSGVPSPSYSKPDFLDSSMKFPASVSPGQNMLSSLCPEGSANLLNLSRSGPSLLSEQLPQQQWTQKYPPMQVNAYGSTVQYSGKDSAMVLPHLNSEAQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHVDLQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01559 840 Gene3D - 710 803 - -
Phco11g01559 840 SMART B3_2 127 229 IPR003340 GO:0003677
Phco11g01559 840 Gene3D - 291 363 - -
Phco11g01559 840 MobiDBLite consensus disorder prediction 818 840 - -
Phco11g01559 840 FunFam Auxin response factor 291 363 - -
Phco11g01559 840 FunFam Auxin response factor 709 803 - -
Phco11g01559 840 Gene3D - 125 228 IPR015300 -
Phco11g01559 840 ProSiteProfiles PB1 domain profile. 714 798 IPR000270 GO:0005515
Phco11g01559 840 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco11g01559 840 MobiDBLite consensus disorder prediction 818 832 - -
Phco11g01559 840 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Phco11g01559 840 MobiDBLite consensus disorder prediction 470 494 - -
Phco11g01559 840 Pfam AUX/IAA family 710 798 IPR033389 -
Phco11g01559 840 FunFam Auxin response factor 125 229 - -
Phco11g01559 840 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Phco11g01559 840 SUPERFAMILY CAD & PB1 domains 707 788 - -
Phco11g01559 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 803 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco11g01559 840 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Phco11g01559 840 MobiDBLite consensus disorder prediction 545 559 - -
Phco11g01559 840 CDD B3_DNA 126 227 IPR003340 GO:0003677
Phco11g01559 840 MobiDBLite consensus disorder prediction 536 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01559 Phco-Chr11 11902527 11909050 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco11g01559 B3 1.4e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01559 11 11902527 11909050 Phco11g01559 11 11902527 11909050 ECH
Phco11g01559 11 11902527 11909050 Phco3g00512 3 3965325 3975534 PCT