Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01556 ATGGTGCTGCAACTGCATCTCAACCTCCTACCCTTAACTTTCTTCATCTTCTGGAGCCTTCAGGGTGCCCTAGGAGACCCTCAAATTCTTTTGCTCAACAAGGGGTGTAGCCAATACAACGCCACAGATTTGTCCAATTTCAACCAGAATCTAAACGCAACTTTGAATGAACTTAGAGTTCAAGTTAGCAACCAGAGCAAACACTTTGCCACGGCTCAAGAAGCTAGAGGACAAGACCCTGTCTATGCCTTGTTCCAATGCAGGAACTACCTCTCTACTACTGACTGCGCCGCCTGCTTTCACGCCGCCGCCGCCCAAATCCGCAACTGCTCCGCCGGGGCCAACGGTGCCCGTGTCATCTATGACGGTTGCTTCCTTAGGTATGAGAGCACTGGCTTCTTTGACCAGACCACTATGGCTGGCAACAGTATGATTTGTGGAAATCAGACAGCAGTTGGAGCCACTGATTTCAATACAACTGCACAGCAAGTTCTAAAGGATCTGCAAATTGCAACCCCCAAAATCACTGGTTTCTTTGCAGCTACCAAGACACAAGTTGCTGGTGGTGCAATGTATGCCATTGCACAATGTGCTGAAACTGTCTCAGAGAGTGGTTGTCTGGATTGCCTCACAGTTGGATATAACAACATACATATTTGTTTACCCAATACAGAGGGCAGAGCATTTGATGCTGGATGTTTTATGAGATACTCAGAGACAGCCTTTTTTGCTGATAACCAGACCATTGATATCACACCCTTCTTGCAACAAGGGGGGTCAAGCAAGAAGGGAGCCATTATTGGTGGGGTTGTTGGAGGTGTAGGTCTCTTGGTTATCCTCCTTGGACTAATTGTCTTGCTTAGACTGTACAAGAAACCCAAGAGGGATCGAAGAGATAATATATTGGGAGCAACTGAATTGAAAGGTCCAGTTTCGTTCAGGTATAAGGATTTGAAGGTTGCAACAAAAGATTTCAGTGAAGAAAATAAACTAGGACAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGGAAAATAGTTGCAGTGAAGAAATTATCTTTAGGCCACTCAGGAAAGATCGATGAACAATTTGAAAGTGAAGTGAAGCTTATAAGCAACGTTCATCACAAGAATCTAGTTCGACTCCTTGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAATAGCAGCTTGGATAGATTCTTATTTGGTGAAGGAAAGGATTCTCTCAGCTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCTTATCTACATGAGGATTTCCATGTTTGCATCATACATAGGGATATAAAGACCAGCAATATCCTCTTGGATGATGAGATGCAACCAAGAATTGCTGATTTTGGGTTGGCAAGACTTCTACCAGATGACCAATCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGTTATCAGAGAAGGCTGATGCCTACAGCTTTGGTGTTGTAGTCCTAGAAATAATAAGTGGCCAAAAGAATAGTGGATTGAGGGCAGATTCTAATGGTGAATTCCTCCTTCAAAGAGCATGGAAACTTTATGAGGAAGACATGCATTTGGGGTTGGTTGACAAGACATTGGATCCTGAAGAGTATGAGGTAGAAGAAGTGAAGAAAGTGATAGAGATTGCTTTGCTTTGCATTCAAGCATCAGCTGCTGCAAGGCCAACAATGTCTGAAGTAGTAGCCTCACTGAAAAGCAAGAACTCAATGGGGCAAACTAGGCCTTCTATGCCTGTATTTGTTGAATCTAACTTCAGGAGTCGTGCAGCTGACACGTCTACCTCAACTGCCTCCTCTACATCTAATGCTACTGCTTCCATTTCTATCCTCTCAGCTCGATGA 1938 0.4365 MVLQLHLNLLPLTFFIFWSLQGALGDPQILLLNKGCSQYNATDLSNFNQNLNATLNELRVQVSNQSKHFATAQEARGQDPVYALFQCRNYLSTTDCAACFHAAAAQIRNCSAGANGARVIYDGCFLRYESTGFFDQTTMAGNSMICGNQTAVGATDFNTTAQQVLKDLQIATPKITGFFAATKTQVAGGAMYAIAQCAETVSESGCLDCLTVGYNNIHICLPNTEGRAFDAGCFMRYSETAFFADNQTIDITPFLQQGGSSKKGAIIGGVVGGVGLLVILLGLIVLLRLYKKPKRDRRDNILGATELKGPVSFRYKDLKVATKDFSEENKLGQGGFGDVYKGTLKNGKIVAVKKLSLGHSGKIDEQFESEVKLISNVHHKNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGEGKDSLSWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDEMQPRIADFGLARLLPDDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSFGVVVLEIISGQKNSGLRADSNGEFLLQRAWKLYEEDMHLGLVDKTLDPEEYEVEEVKKVIEIALLCIQASAAARPTMSEVVASLKSKNSMGQTRPSMPVFVESNFRSRAADTSTSTASSTSNATASISILSAR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01556 645 Coils Coil 48 68 - -
Phco11g01556 645 Gene3D Transferase(Phosphotransferase) domain 1 402 613 - -
Phco11g01556 645 Gene3D Phosphorylase Kinase; domain 1 290 401 - -
Phco11g01556 645 SUPERFAMILY Protein kinase-like (PK-like) 303 596 IPR011009 -
Phco11g01556 645 Pfam Protein tyrosine and serine/threonine kinase 328 596 IPR001245 GO:0004672|GO:0006468
Phco11g01556 645 ProSiteProfiles Gnk2-homologous domain profile. 139 242 IPR002902 -
Phco11g01556 645 FunFam Cysteine-rich receptor-like protein kinase 2 402 604 - -
Phco11g01556 645 FunFam Cysteine-rich receptor-like protein kinase 2 141 242 - -
Phco11g01556 645 FunFam Cysteine-rich receptor-like protein kinase 2 292 401 - -
Phco11g01556 645 CDD STKc_IRAK 331 597 - -
Phco11g01556 645 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Phco11g01556 645 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 633 - -
Phco11g01556 645 FunFam Cysteine-rich receptor-like protein kinase 2 28 133 - -
Phco11g01556 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Phco11g01556 645 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Phco11g01556 645 Pfam Salt stress response/antifungal 36 130 IPR002902 -
Phco11g01556 645 Pfam Salt stress response/antifungal 151 239 IPR002902 -
Phco11g01556 645 ProSiteProfiles Protein kinase domain profile. 325 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01556 645 Gene3D - 29 133 IPR038408 -
Phco11g01556 645 Gene3D - 140 242 IPR038408 -
Phco11g01556 645 SMART serkin_6 325 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01556 Phco-Chr11 11889469 11895175 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco11g01556 PK_Tyr_Ser-Thr 7.8e-50 CL0016