Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01553 ATGCTGCAACTTAAGGTAGTGGCCTTAATTTTGATATGGTGGAGCATTAATGGTGTTGAAGATGCAGTTGCAGCCCCAGATGCACATTTAGTAAACATGGGGTGCAGCTCGTTCAATGCTTCCGATTTGAGAAGCTTCTTTGCGAATATCAATGAAACGTTTTCAGACATGAGAGAAGAGATTAGAAATCAAAGCAAGCACTTTGGCACAGTACAGAAAGCCAGAGGAGAGGTCCTCACATACACTATGTTTCAGTGCAGGAACTATCTCTCCAAAAATGACTGTCTTTCTTGCTTCAACACTGCCACCACCCAGATCCGCAACTGCTCCGGTGGCAACGGTGCCAGAGTCATCTACGATAGCTGCTTCCTCAGGTATGAGAGCAACAGGTTCTACGATCAGACCAATGAAATTGGAAGTGGGGTATCATGTGGGAACATAAGTTCAACTGTTCCTGATTTTAAAGTTGCTGGAGAACAAGCCCTAATGGACCTCCAAACAGCAACACCGAAAACTAGAGATTTTTATGCAGCTACTAAGACACTGGTGGCCGGTGGTAGTGCGGTTTATGCTGTTGCACAGTGTGTTGAAACTGCCACTGCGATTAATTGTCAGAATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCTAACACAGAGGGAAGAGCATATGATGCTGGCTGTTTTATGAGATACTCCACCACACCTTTCTTTGCTGATAATCAAACCATTGATATTGCACCGTATTTGAAAAAAGGAAATTCAAACAAGAAATGGGCTATAATAGGTGGTGTTGTAGGAGGGGTTGTTCTTCTCCTTCTGTTGTTTGCCTGGAGAATGTCAAGAAAAAGAAACAAGGTTCCCAGAGGTGACATATTGGGAGCAACAGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCTGCAACCAAAAATTTCAGTGCAGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTAAAGAAACTAGTTTTTGGGAAATCAAGCAACATGGAGGATAATTTTGAAGGGGAAGTGAAGCTTATAAGTAATGTTCATCACCGAAATCTCGTTAGGCTTCTTGGTTGCTGTAGCAAAAGCCAAGAAAGAATCTTAGTTTATGAATACATGGCTAATAAAAGTCTTGACAAATTCTTATTCGGTAACAAAAAAGGTTCCCTTAATTGGAAACAACGCTCTGATATAATTTTAGGCACAGCAAGAGGACTGGCATATCTGCATGAGGAGTTCCACGTCTCCATCATACATAGAGATATCAAGACTGCTAATATCCTGTTAAATGATGATCTTCAGCCAAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTCCCAGAGGATCGTTCTCATCTCAGCACAAAATTTGCAGGAACTTTGGGATACACAGCGCCTGAGTATGCCATGCACGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATCGTAAGTGGTCAAAAGAGTACTGATGTAAAGGATGACGAAGATGGCGAATACCTTCTTCGACGAGCATGGAAACTGCATGAAAGAGGCTTGTACTTGGAGCTGGTAGACAATGCAATAGACCCTAATGAATATGAAGTAGAAGAAGTGAAGAAAATCATAGAAATTGCTTTGTTATGCACTCAGGCATCAGCTTCAACGAGGCCAACAATGTCTGAAGTAGTAATGCTACTGAAAAGCAAGAGCTTAATGGAGCACCTGCAACCAACTATGCCTGTGTTTGTTGAAACAAATATGATCCCTCGGGAAAGCAACTCTACTAGTTCATCTAATGCTACTGTCTCCATTTCTATTCCATCAGCTCGATAG 1905 0.4142 MLQLKVVALILIWWSINGVEDAVAAPDAHLVNMGCSSFNASDLRSFFANINETFSDMREEIRNQSKHFGTVQKARGEVLTYTMFQCRNYLSKNDCLSCFNTATTQIRNCSGGNGARVIYDSCFLRYESNRFYDQTNEIGSGVSCGNISSTVPDFKVAGEQALMDLQTATPKTRDFYAATKTLVAGGSAVYAVAQCVETATAINCQNCMQVGYNNLQSCLPNTEGRAYDAGCFMRYSTTPFFADNQTIDIAPYLKKGNSNKKWAIIGGVVGGVVLLLLLFAWRMSRKRNKVPRGDILGATELKGPVNYKYNDLKAATKNFSAENKLGEGGFGDVYKGTLKNGKVVAVKKLVFGKSSNMEDNFEGEVKLISNVHHRNLVRLLGCCSKSQERILVYEYMANKSLDKFLFGNKKGSLNWKQRSDIILGTARGLAYLHEEFHVSIIHRDIKTANILLNDDLQPKIADFGLARLLPEDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIVSGQKSTDVKDDEDGEYLLRRAWKLHERGLYLELVDNAIDPNEYEVEEVKKIIEIALLCTQASASTRPTMSEVVMLLKSKSLMEHLQPTMPVFVETNMIPRESNSTSSSNATVSISIPSAR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01553 634 CDD STKc_IRAK 325 591 - -
Phco11g01553 634 FunFam Cysteine-rich receptor-like protein kinase 2 284 395 - -
Phco11g01553 634 Pfam Salt stress response/antifungal 153 237 IPR002902 -
Phco11g01553 634 Pfam Salt stress response/antifungal 39 128 IPR002902 -
Phco11g01553 634 Gene3D Phosphorylase Kinase; domain 1 284 395 - -
Phco11g01553 634 Pfam Protein kinase domain 320 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01553 634 Gene3D Transferase(Phosphotransferase) domain 1 396 603 - -
Phco11g01553 634 SMART serkin_6 319 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01553 634 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Phco11g01553 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Phco11g01553 634 FunFam Cysteine-rich receptor-like protein kinase 2 396 598 - -
Phco11g01553 634 SUPERFAMILY Protein kinase-like (PK-like) 304 623 IPR011009 -
Phco11g01553 634 ProSiteProfiles Protein kinase domain profile. 319 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01553 634 Gene3D - 141 240 IPR038408 -
Phco11g01553 634 Gene3D - 27 131 IPR038408 -
Phco11g01553 634 ProSitePatterns Protein kinases ATP-binding region signature. 325 348 IPR017441 GO:0005524
Phco11g01553 634 MobiDBLite consensus disorder prediction 614 634 - -
Phco11g01553 634 ProSiteProfiles Gnk2-homologous domain profile. 135 240 IPR002902 -
Phco11g01553 634 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 81 619 - -
Phco11g01553 634 FunFam Cysteine-rich receptor-like protein kinase 2 139 240 - -
Phco11g01553 634 FunFam Cysteine-rich receptor-like protein kinase 2 27 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01553 Phco-Chr11 11864806 11867879 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco11g01553 Pkinase 8.1e-51 CL0016