Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01528 ATGACGATTCGAGATCAAAATGAATTCAACAGATCACCGGGTGGTCCTTCAGTAGGAAGTGGTGTGTCTTTGAGTTCTGGAGTGCATTCTGTTACTCATATTCAACTTAATGAACAGTTTTCTTGTGGGAGTGACTATGCTCTGAAGGTCAGGAAACCATATACCATCACAAAACAGAGAGAGAGGTGGACAGATGAAGAACACAAGAAGTTCCTTGAAGCTTTAAAGCTGCATGGTCGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGACCCTACTGGGAGTGTTACAAATACAATGGATTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAGCTAGTTGAGACTCCTAATAAAGAAACTTCAATCCCAGAACAACTAACGAAGTCTAGTTCTCTGAAGTCATCAGATTTTGATCAAGAAAACCAATCTCCGAAATCAGTATTATCAGGAGCTGGTTCAGACAGCCTTAGCTCCTCAGATTCAGATACACCAAATGAAAGTTTGTCCCCCATGTCATCCATCAGTGACATCCATACAAGTGACTTTACATGTGCCGAGCCCAACACAACATCAGAAGAAGCTGGAATAAACGCCGATTCTTCTCATGATGAGAAACCTCTTATGAAATTCAAGCTTCCTACAGACGAAAGTCTTTGCATGAAAGAAGACACAACAGAAGAATCTTCCGGCCAGACTTTCAAACTCTTTGGGATTACACTTTTTGTAACAGATCCATGCAAACCCTCTTCTCCAACAACTGAAGCATGCAAACCAATACCTCTAAACATAAGCAAGGGGGATGGAAGATTGGAACTTCTTGGCCACATCACACCAAGTGAAACATCAGCCATATCCCTGCTAAAGGTGAGAGTGGGTCCTGAAGCATGTGGGAAAGGGTTTGTGCCATATGAAAGGTGCATGGCAGGGAGAGAAAACCAGTCTTCATCTGTGACAAATGATAATAGAGAAGAACAATGCATCCACCTTTCCTTGTAG 1086 0.4263 MTIRDQNEFNRSPGGPSVGSGVSLSSGVHSVTHIQLNEQFSCGSDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGSVTNTMDSIEIPPPRPKRKPMHPYPRKLVETPNKETSIPEQLTKSSSLKSSDFDQENQSPKSVLSGAGSDSLSSSDSDTPNESLSPMSSISDIHTSDFTCAEPNTTSEEAGINADSSHDEKPLMKFKLPTDESLCMKEDTTEESSGQTFKLFGITLFVTDPCKPSSPTTEACKPIPLNISKGDGRLELLGHITPSETSAISLLKVRVGPEACGKGFVPYERCMAGRENQSSSVTNDNREEQCIHLSL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01528 361 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Phco11g01528 361 MobiDBLite consensus disorder prediction 126 143 - -
Phco11g01528 361 PANTHER SWI/SNF COMPLEX-RELATED 45 258 - -
Phco11g01528 361 SMART sant 59 107 IPR001005 -
Phco11g01528 361 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Phco11g01528 361 MobiDBLite consensus disorder prediction 148 226 - -
Phco11g01528 361 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Phco11g01528 361 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Phco11g01528 361 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Phco11g01528 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Phco11g01528 361 CDD SANT 62 105 IPR001005 -
Phco11g01528 361 MobiDBLite consensus disorder prediction 1 23 - -
Phco11g01528 361 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Phco11g01528 361 MobiDBLite consensus disorder prediction 112 237 - -
Phco11g01528 361 Gene3D - 62 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01528 Phco-Chr11 11628069 11630224 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco11g01528 Myb_DNA-binding 5.9e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01528 11 11628069 11630224 Phco11g01528 11 11628069 11630224 ECH