Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01478 ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCTCCACAGAGAACACTGGAGAAGATGCAGGAGCAGTTAAACAGCAATTAGAGATGCTTGGCCAACTCCATAGTCCAAATTCAAACACTTCAACCACAACAAATAATAGCAATGGCTCAAACACAATTTCACAACCACCTCACAAGAAGAAAAGAAACCTACCAGGAAATCCAGACCCAAATGCCGAAGTGGTAGCTCTATCGCCAAACACCCTGGTAGCCACAAACAGGTTCGTGTGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAGAACCTTCAATTGCACCGTCGAGGGCATAACCTACCGTGGAAGCTGAAACTGAGAACCACGACGGAAGTGAGAAAGCGCGTTTACGTTTGTCCCGAACCCTCCTGCGTCCACCACAACCCAGCTCGAGCACTGGGCGATCTCACGGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATACGCTGTTCATTCTGACTGGAAAGCGCATTCCAAAATATGTGGAACCAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGCTTCATCACACACAGAGCTTTCTGCGATGCACTGAGTGATGAGAACAACAAATTCAACGAAGCAAGTATTATGCATGGTTCAAACCTGCAACCACCAATAATCCCAAACCTTGTAGCATCACTACCAATCAATACCAATAATCACAAGCAACCATTATCACTCCCTCATGACCTCATTGCAACAATTCCAGCAAAACCCTTTAACAACAACATCTCAGCATTCACAAGAACCCTTTCATCCACCTCTTCTCCCTCTCAACTGTGCTCAAACTCACCAAACATCAACATGTTTGAGGAAAATGCTCAAACTAACATGTCCGCCACAGCACTGCTTCAAAAAGCTGCACAAATGGGCGCAACAGTGAATAGTAACAACAACAGCATGATGACAGAAAAGGGCTTTGCTACAAGCATGGCACCACCATCATATGGGGTCTTGAACAACCACCACATTCACAACGGTCAACAAGACCTGTCTCACTATAACTTCCATGCAAATGGGACGATGATGGATGGTGGTGGAAATAGCATGGGAGGAATGAGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAACCGAAGCAGTTACAGTGATGTTTTGCATGCAATGAATAATGGTAGGTCAACAACTTCCATTGATGTTGGTGGAGCTAAAGGGGGTGAGGATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGTGGTGGTGATGGAAGTTTCTTTGGTGGTGAACAGCCAGAACTAAAGATGGAATATGGAGAAATTAGTCAAATAAGAATTCAAGGCTTGAACCAGTTTCAGCAACAAACAGCAGCATATGAAAATTGA 1485 0.4391 MSNSNITSCDSWSFSTENTGEDAGAVKQQLEMLGQLHSPNSNTSTTTNNSNGSNTISQPPHKKKRNLPGNPDPNAEVVALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSDENNKFNEASIMHGSNLQPPIIPNLVASLPINTNNHKQPLSLPHDLIATIPAKPFNNNISAFTRTLSSTSSPSQLCSNSPNINMFEENAQTNMSATALLQKAAQMGATVNSNNNSMMTEKGFATSMAPPSYGVLNNHHIHNGQQDLSHYNFHANGTMMDGGGNSMGGMSGLDMFNAILDQSKALSKIIEQNNRSSYSDVLHAMNNGRSTTSIDVGGAKGGEDVMTLDLLGIGGGGGDGSFFGGEQPELKMEYGEISQIRIQGLNQFQQQTAAYEN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01478 494 Gene3D Classic Zinc Finger 146 224 - -
Phco11g01478 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 467 IPR031140 -
Phco11g01478 494 Pfam Zinc finger, C2H2 type 91 113 IPR013087 -
Phco11g01478 494 MobiDBLite consensus disorder prediction 1 76 - -
Phco11g01478 494 SMART c2h2final6 167 187 IPR013087 -
Phco11g01478 494 SMART c2h2final6 132 162 IPR013087 -
Phco11g01478 494 SMART c2h2final6 91 113 IPR013087 -
Phco11g01478 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Phco11g01478 494 MobiDBLite consensus disorder prediction 33 61 - -
Phco11g01478 494 FunFam protein indeterminate-domain 12-like 70 138 - -
Phco11g01478 494 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Phco11g01478 494 Gene3D Classic Zinc Finger 87 114 - -
Phco11g01478 494 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Phco11g01478 494 MobiDBLite consensus disorder prediction 1 23 - -
Phco11g01478 494 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01478 Phco-Chr11 11290311 11293516 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco11g01478 zf-C2H2 0.005 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01478 11 11290311 11293516 Phco6g00975 6 9542258 9545336 ECH
Phco11g01478 11 11290311 11293516 Phco11g01478 11 11290311 11293516 ECH
Phco11g01478 11 11290311 11293516 Phco6g00975 6 9542258 9545336 PCT