Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01470 ATGCAAGACATTTTCGGATCAGTTCGCAGATCACTGGTATTCCGCGGTTCGCCGGAGAGCGAAGAGACCTCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATCCGAACTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCGTCTATTCCTGTGGACGCCGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGTGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAATAGTGCTTCAAAGGAGAAGGCACAGGCTCACATAAAAGAGCTAGAGGAAGAAGTCAAATTACTTAAAGACCTTTCACATCCAAACATTGTTAGATATTTGGGTACAGTCAGAGAAGATGACACCTTAAATATTCTCTTGGAGTTTGTTCCTGGTGGGTCCATATCATCCCTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTGTAATAAGAACCTACACGAAGCAGCTACTAATTGGACTTGAGTACTTGCACAAAAATGGGATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGGGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAAACTGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGTTGTACTGTGATTGAGATGGCCACGGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATTGGGACAACTAAGTCTCATCCGCCAATACCTGATCATCTCTCAGTTGCAGCAAAAGATTTTTTGCTAAAATGTTTGCAGAAGGAACCAGTTTTGAGGTCGTCGGCATCAGAACTGCTGCAGCATCCCTTTGTAACTGGCGAACACATGAATTCTCTTACTCTGTCATCTAATGTCACGGAAAATTTCATAGCTTCGTCACCATCATGTGCTCCAAATGATGAATCCTTCCTTTGCTCTTCAACAGTAAATCCTCTGGACTCGGGAAATAAACAATTGTGTGGAATGAGCAATGATGATGATGATATGTGTGTGATTGATGACAAAGAAGAGTTCTCGCAGAATGATGTTAAATACAAATCATTGATGTCAACTAATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTTCAGAACTGGAAAATCGAGAGGTCAATTTTGTCACAGATGAAAGTTACATGCCACCTGATCAGTCAGGGGATGATAAGGGGCAGACAGATTTTTCCTTTCCAGGTGTCCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATCAAAGCCTTTTTAGATGAGAAGGCTCTTGAACTGAAAAAACTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGTTATTGACAGCACAAGTGATGATACCGCTTCTCGAAATTTTTTGAAATTACCTCCTAAAAGCAGGTCACCAAATCGAGTACCAATCAGCACTCCATCTAAAGCCATCGATAATACTGGAAGTCCTGGAAGTAATGGCCGGTCCTCATCAACTGTTGGCCATGTAAATAACCATACTTCACAGGATATTCCAGCATCTCCCCTTAAAGGAGTGATAGTTGATTCCCAGCAGCAGCCTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAATGGAAAGAAGAACTCGACCAGGAGCTTGAGAGGAAGCGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGAGCTCTACATAGGCAGAGGGAACGAACAAGATTTGCTTCTCCCAACAAATAA 1959 0.4467 MQDIFGSVRRSLVFRGSPESEETSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSIPVDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAANSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREDDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLIGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPVLRSSASELLQHPFVTGEHMNSLTLSSNVTENFIASSPSCAPNDESFLCSSTVNPLDSGNKQLCGMSNDDDDMCVIDDKEEFSQNDVKYKSLMSTNIESFNPMSDPSDDWGCKFDASSELENREVNFVTDESYMPPDQSGDDKGQTDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVIDSTSDDTASRNFLKLPPKSRSPNRVPISTPSKAIDNTGSPGSNGRSSSTVGHVNNHTSQDIPASPLKGVIVDSQQQPSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPNK 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01470 652 CDD STKc_MAPKKK 64 328 - -
Phco11g01470 652 SMART serkin_6 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01470 652 Pfam Protein kinase domain 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01470 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Phco11g01470 652 Coils Coil 603 623 - -
Phco11g01470 652 FunFam Serine/threonine-protein kinase STE11 61 155 - -
Phco11g01470 652 Gene3D Transferase(Phosphotransferase) domain 1 64 358 - -
Phco11g01470 652 FunFam Mitogen-activated protein kinase kinase kinase 2 64 357 - -
Phco11g01470 652 MobiDBLite consensus disorder prediction 601 623 - -
Phco11g01470 652 SUPERFAMILY Protein kinase-like (PK-like) 64 329 IPR011009 -
Phco11g01470 652 ProSiteProfiles Protein kinase domain profile. 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01470 652 MobiDBLite consensus disorder prediction 511 578 - -
Phco11g01470 652 MobiDBLite consensus disorder prediction 633 652 - -
Phco11g01470 652 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 50 335 - -
Phco11g01470 652 MobiDBLite consensus disorder prediction 511 652 - -
Phco11g01470 652 MobiDBLite consensus disorder prediction 585 600 - -
Phco11g01470 652 Coils Coil 98 125 - -
Phco11g01470 652 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Phco11g01470 652 MobiDBLite consensus disorder prediction 444 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01470 Phco-Chr11 11189952 11195764 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Phco11g01470 Pkinase 2.6e-71 CL0016