Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01450 ATGTTAGTCAGAATCGATCACACAGCTTTTGTTTTCGCACTTCGCTGTCTGAGGTTCGTTCCAAACAGAAACATTGTTAATTCTCACGACCACTTCTGCTATGCTTGCTTTTGTTCGGGATTATCAGTGTTTGGGGAGCGCGACATCATCTCTCGGGGAAGAATGGATCATCAAGGGCATGGCCAGAACCCATCGATGGGGGTTGTTGGTAGTGGAGCTCAATTAACATATGGTTCTAACCCATATCAGCAAGGCCAACTAACTGGGCCGCCGGGGTCGGTTGTGACATCGGTTGGGACCATTCAATCCACCGGTCAACCTGCTGGAGCACAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAACATCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAATCAGTACCAAGAAATTGAGAAGGTTACCGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGAATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTTATATTAGAGTTGACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAAAATGACATTGCTGCAGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTACCCCGTGAGGACTTGAAAGATGAAGTGCTTGCATCTATCCCTAGAGGAACAATGCCTGTTGGAGGACCCCCTGATGCACTTCCATACTGCTACATGCCGCCTCAGCATGCTCCTCAAGTTGGAACTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCCCAGCCTCCAGACCAACGTCAACCATCCCCAGAACATTAG 945 0.4709 MLVRIDHTAFVFALRCLRFVPNRNIVNSHDHFCYACFCSGLSVFGERDIISRGRMDHQGHGQNPSMGVVGSGAQLTYGSNPYQQGQLTGPPGSVVTSVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPPDALPYCYMPPQHAPQVGTAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQPSPEH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01450 314 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 155 218 IPR003958 -
Phco11g01450 314 SUPERFAMILY Histone-fold 127 227 IPR009072 GO:0046982
Phco11g01450 314 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 116 252 - -
Phco11g01450 314 Gene3D Histone, subunit A 117 233 IPR009072 GO:0046982
Phco11g01450 314 FunFam Nuclear transcription factor Y subunit gamma 120 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01450 Phco-Chr11 11095319 11097399 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Phco11g01450 CBFD_NFYB_HMF 8e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01450 11 11095319 11097399 Phco6g01184 6 11903155 11903943 ECH
Phco11g01450 11 11095319 11097399 Phco11g01450 11 11095319 11097399 ECH
Phco11g01450 11 11095319 11097399 Phco6g01184 6 11903155 11903943 PCT