Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01444 ATGTCTGTGTTAACTGCAAAGGTGAGGAAACAGCATAATCTATGGGCAAATGTTGAGTCTGATCTTGCTGAAATGAGTTTGCAAATGGAATCCCTTGCTTCACCTCAAACTGAAGGGCCTTTAAATGCTCAGAAACATTCCTCAATAGCATGCAACTCGGCACTTTCCATCTTCATCTTCTCCTTGTTCTTGTTTCAGGGCACCCGCAGCAAAATTTTGTGCATGTGTTTGTCTGAGGGAGAGAGAGTAATGGCGTTAGAAGCAGTAGTATATCCCCAACCCCAGGACCCGTTTGGCTGTGCAATCAAAGACCCCTACAACTACAACTTGTTAGAAGCTGCTGTAGGAAGCTGGGGTTATGCAGACTTCACCCTTGAAAAAGAAGACCAAGCTTGTGTCACTTTTATGGACAACCAAACAGAGAATTATCCCTATGGAGAATTGAACTCTTCTCCTCCATCCCTGTTGCCTCACAACATGAATGCATCAAATCCTCAGTCTTCAGAAACCAGCAACACGCAGAACAACTTAGATAGTTCAGTATCCACCCCAGCTCGTCCCAAGAGGCGCAGAACCAAAAGCAGGAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTACCTCTCTGTTCTTCGCGCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATCAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAGGAAAAAGAGGGGAAGCCTGATGTGCCCTTTTCTGAGTTCTTCTCATTTCCTCAGTACTCAACAAGTGCCAGTGGTGGCTGTGATAACTCTGCAGCCATGAGTGAGCAAAAGGGTGAGGTTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATAGTATCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACAGAGGAAATTGTCCTCTATTCTCTCAGTGTCAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGCTGAATAGGATCCAACAAGAGTGA 1185 0.4498 MSVLTAKVRKQHNLWANVESDLAEMSLQMESLASPQTEGPLNAQKHSSIACNSALSIFIFSLFLFQGTRSKILCMCLSEGERVMALEAVVYPQPQDPFGCAIKDPYNYNLLEAAVGSWGYADFTLEKEDQACVTFMDNQTENYPYGELNSSPPSLLPHNMNASNPQSSETSNTQNNLDSSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRALMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKPDVPFSEFFSFPQYSTSASGGCDNSAAMSEQKGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTEEIVLYSLSVKVEEDCKLGSVDEIAAAVYQMLNRIQQE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01444 394 MobiDBLite consensus disorder prediction 143 202 - -
Phco11g01444 394 Pfam Helix-loop-helix DNA-binding domain 204 255 IPR011598 GO:0046983
Phco11g01444 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 254 IPR011598 GO:0046983
Phco11g01444 394 CDD bHLH_AtFAMA_like 206 277 - -
Phco11g01444 394 Gene3D - 186 269 IPR036638 GO:0046983
Phco11g01444 394 MobiDBLite consensus disorder prediction 143 183 - -
Phco11g01444 394 SMART finulus 209 260 IPR011598 GO:0046983
Phco11g01444 394 PANTHER MAX DIMERIZATION, MAD 111 393 - -
Phco11g01444 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 267 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01444 Phco-Chr11 11043653 11049131 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco11g01444 HLH 2.2e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01444 11 11043653 11049131 Phco11g01444 11 11043653 11049131 ECH
Phco11g01444 11 11043653 11049131 Phco6g01174 6 11797983 11799660 PCT