Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01425 ATGGTCCCAATTGGTCATGCTTCTGATGACAAGCAGAAAAATCAAGACTCAGGAGAAATCGTTTTGGAGAAAGACAAAAGTGTGGTAACTCTAAGAGAACTCTTTGAAGAATACACTGACAAATCTCATCAACCACCTGAATTTGCAGGCAGTAATCCAAGCTCAAGGACACGGTTTCACTGGAGGATGTTTTTAAAGCCATGCAAAATGAGATCAATTGAGCACCTACCCTCTTTTCCTCCAAGTTGTTTGTCAAGCACAACAAAGCCCACATGCAAAGACATTGGAAAAAACACTATTCAATGTAATCCACAAAGTTCCAGAACTTTGGTGAATTTCAGGCTTTCTGACCTGAGAAATGCAACCAACAACTTTAGCAATGAGAATATAATTGGAAGAGGTGGCTATGCCTATGTTTACAAGGGTAGCCTACAAGATGGGCAATTAATAGCAGTTAAGCAACTGAGTAGAGGGACTCCAGAAGACAGAATATCAATTCTTCTATCTGAGCTAGGAATTCTTGCTCATGTTGACCACCCTAATACTGCCATGCTTATTGGATTTGGAGTAGAAGGGGGAATGCACCTTGTGTTCCAATTATCTCCTCTGGGAAATTTAGGATCTCTTCTTCATGGTCCAGATAAAAATACATTAGATTGGAGCAAAAGGTATAAAATTATTTTGGGGATAGCGGATGGCCTCCTCTATCTTCATGAGATTTGTCAAAGGCGAATCGTTCATAGAGATCTTAAATCAGATAATATTCTGCTGACAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTCTCAAAATGGCTACCGGAACCCTGTACTCATCATATTGTTTCAAAATTTGAAGGCACAATGGGGTATTTTGCTCCTGAGTATTTGATGCGTGGCATAGTAAACGAAAAAACTGATATTTATTCCTTTGGGGTCTTACTTTTGGAGATTATAACTGGGCGTCATGCTTTGAATCATTTGAAAGAAAGTATTGTGTCATGGGCAAAGCCTTTATTCCAAGCTAATAATATTAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGACTGGGACCAAATGGAACGTGTTGTTTTGACAGCATCTCTGTGTGTTGAGCCGTTTCCTATCTTACGCCCCAGCATGAGTCAGATTGCAGTACTGCTAAGAGGTGATGACTATGAGATGGAACATAGTGAGAGGAGTAAGAAGATGCTGAAGAAAACAACTGAAGGAGCTATCTAA 1251 0.3989 MVPIGHASDDKQKNQDSGEIVLEKDKSVVTLRELFEEYTDKSHQPPEFAGSNPSSRTRFHWRMFLKPCKMRSIEHLPSFPPSCLSSTTKPTCKDIGKNTIQCNPQSSRTLVNFRLSDLRNATNNFSNENIIGRGGYAYVYKGSLQDGQLIAVKQLSRGTPEDRISILLSELGILAHVDHPNTAMLIGFGVEGGMHLVFQLSPLGNLGSLLHGPDKNTLDWSKRYKIILGIADGLLYLHEICQRRIVHRDLKSDNILLTENFEPQICDFGLSKWLPEPCTHHIVSKFEGTMGYFAPEYLMRGIVNEKTDIYSFGVLLLEIITGRHALNHLKESIVSWAKPLFQANNIKDLVDPSLGDDYDWDQMERVVLTASLCVEPFPILRPSMSQIAVLLRGDDYEMEHSERSKKMLKKTTEGAI 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01425 416 SMART serkin_6 125 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01425 416 Gene3D Transferase(Phosphotransferase) domain 1 202 414 - -
Phco11g01425 416 Pfam Protein tyrosine and serine/threonine kinase 128 332 IPR001245 GO:0004672|GO:0006468
Phco11g01425 416 MobiDBLite consensus disorder prediction 1 21 - -
Phco11g01425 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Phco11g01425 416 ProSitePatterns Protein kinases ATP-binding region signature. 131 153 IPR017441 GO:0005524
Phco11g01425 416 ProSiteProfiles Protein kinase domain profile. 125 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01425 416 PANTHER OS08G0249100 PROTEIN 11 409 IPR046958 -
Phco11g01425 416 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 101 200 - -
Phco11g01425 416 Gene3D Phosphorylase Kinase; domain 1 86 199 - -
Phco11g01425 416 SUPERFAMILY Protein kinase-like (PK-like) 102 391 IPR011009 -
Phco11g01425 416 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 202 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01425 Phco-Chr11 10832728 10836496 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Phco11g01425 PK_Tyr_Ser-Thr 9.4e-38 CL0016