Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01378 ATGAATGAACTTCAAACTGATTCTTCTGCCTCTTCGGAGTTCGTCGAAGTTGATCCAACTGGCAGATACGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCCAAGACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAAGTCAAATTGTATGATTTTCTGCAGAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTTCTCAAGACGCTGAAGCACAGAAACATAATGAAGTTTTACACGTCTTGGGTCGATACTGCTAATAGGAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGGCAGTATAGACAAAAGCACAAAAGAGTTAACATTAGGGCAGTGAAGCACTGGTGTAGACAGATCCTGAGAGGGCTTCACTATCTTCATAGCCATGATCCACCTGTGATCCATAGAGATCTAAAATGTGATAATATTTTTGTCAATGGGAACCAAGGGGAAGTTAAGATTGGGGATCTTGGGTTGGCAGCAATTCTCCGCAAGTCTCATGCTGCTCACTGTGTAGGAACACCCGAGTTCATGGCACCAGAAGTTTATGAAGAGTCCTATAACGAATTAGTTGACATATATTCCTTTGGGATGTGTGTGTTAGAAATGGTCACATTTGAATATCCTTATAGTGAATGTAGTCATCCAGCACAAATCTACAAGAAAGTTATTTCTGGGAAGAAACCGGAAGCCTTGTATAAAGTAAAGGACCCAGAAGTGCGACAATTTGTTGAGAAATGCGTGGCAACAGTGTCTCTAAGGCTCTCTGCAAAGGAGCTTCTAGATGATCCTTTTCTTCAGATTGATGATTACGGGTATGATTTGGGGTCTGTGGAGAGTGGAGCATTCGATGGCATGGGTCCTCTTATCCATCAGCCATTTTTTAATCTTCACCGGAGCTATAGTAACATGAGTACTGAATACTCAAATTGCTTTGAATATGAAGGAGACTGGATTTCTCATCCAGCTGAGATTGAACCTAGTGGAATTGAACTTTTCAAGTGCCATGATGATGAAGCCTGCGAAGATGTTGGCATAAGCATCAAAGGAAAGAAGAAAGATGATGGTGGAATTTTTTTGAGACTAAGAATTGCAGACAAAGAAGGACATATTCGAAATATTTATTTCCCATTTGACATAGAGATGGACACAGCATTAAGTGTAGCAACTGAAATGGTAGCAGAACTTGACATTACTGATCAAGATGTTACCAGCATAGCTGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAAGCCAGGACCAGGAATTGAAGAAACTAACCATTTTGTAAATAATTTCTTTTGTCACAATTGTGTGTCTAAAGGTACTTCCGGAGGCAATGTTATGGATTTTCATTCACATAATCAAGTTGGAAAGAATTTGCAGCTTCCTCAATGCTGTAGGCATGGATGTACTTCAATGCATGGTCGATTTGAGGAGGTAACCTTCCCATCTGAGCATGACAATCATGTTAGAGGGGACACACCTATCGAATCAAACCAACCGGACAGCCAGCAGTATCAGGAGCTATGGAATCATCAAGAAAGCTGTGAACTGAGTTCAGTAGAGTCTGATCAAAGCCTTTCCAATGAGCAATATGAACAATTAGATAAATCAGCATTAGCAGAAGACAAAGGAAAGGATGTTTTGGAAAACAATTTTGCACATGATCCAGGAAACCCCCCTAGAAGTTTATCTGGGAATTATTTGTCTACTATCAGTTTGTTATGTCGTGGCTCCGGGAGTGAATATGAGAACGAGGCTCAACAAGAGTTGAGATGGCTCAAAGCAAAACACCAAATGGAGTCCAGAGATCTTAGGGATAAAAGGTTTGGTGTAGCAGCCAAATCTTCGCATTCTAGTAACAAAGAGCACAAAACAGAACAAGGCATTATTCTACCATTGACAGAAACAGTAAATGGAGTGAAAAATGGGATTCACTTGAAACCCTTGTGTAATTTCTGGGATTATGATTCCAGTTGCCATTCTGAAGTCCAAAAGAGCCACTCCAATTTGGACATCCGAAGGCCCCAAAATTGTGAGGTGATATGTTCTCACAGAGAAGGTATGGTTGCTGCAAAGAGTTTCTTCACAGGGTCGCTTCGAGACACTCCATACAGAACAGTTTCCCTTCCCGTTGATGCTGTGGATATCTAA 2214 0.4092 MNELQTDSSASSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVISGKKPEALYKVKDPEVRQFVEKCVATVSLRLSAKELLDDPFLQIDDYGYDLGSVESGAFDGMGPLIHQPFFNLHRSYSNMSTEYSNCFEYEGDWISHPAEIEPSGIELFKCHDDEACEDVGISIKGKKKDDGGIFLRLRIADKEGHIRNIYFPFDIEMDTALSVATEMVAELDITDQDVTSIADMIDGEIASLVPEWKPGPGIEETNHFVNNFFCHNCVSKGTSGGNVMDFHSHNQVGKNLQLPQCCRHGCTSMHGRFEEVTFPSEHDNHVRGDTPIESNQPDSQQYQELWNHQESCELSSVESDQSLSNEQYEQLDKSALAEDKGKDVLENNFAHDPGNPPRSLSGNYLSTISLLCRGSGSEYENEAQQELRWLKAKHQMESRDLRDKRFGVAAKSSHSSNKEHKTEQGIILPLTETVNGVKNGIHLKPLCNFWDYDSSCHSEVQKSHSNLDIRRPQNCEVICSHREGMVAAKSFFTGSLRDTPYRTVSLPVDAVDI 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01378 737 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Phco11g01378 737 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 643 - -
Phco11g01378 737 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01378 737 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 428 IPR024678 GO:0004674|GO:0005524
Phco11g01378 737 CDD STKc_WNK 22 281 - -
Phco11g01378 737 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01378 737 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Phco11g01378 737 MobiDBLite consensus disorder prediction 505 524 - -
Phco11g01378 737 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01378 737 Gene3D - 371 437 - -
Phco11g01378 737 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Phco11g01378 737 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Phco11g01378 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Phco11g01378 737 FunFam probable serine/threonine-protein kinase WNK9 371 455 - -
Phco11g01378 737 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01378 Phco-Chr11 10406428 10409409 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Phco11g01378 Pkinase 6.8e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01378 11 10406428 10409409 Phco11g01378 11 10406428 10409409 ECH
Phco11g01378 11 10406428 10409409 Phco6g01130 6 11380998 11383969 PCT