Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01370 ATGTTCGATGGAGCAGCGCCAGACCAGTTCCACCAATTCATATCACCAAGGACCACTCTTCCTCTCCACTTGTCTTTCCCTCTCCATGCCTCTTCAACTCCCTCAACTACCTTCCTACCCTTTCATCATCCCCATAACCCTTCTCAATCTCCACACCACTTCCCACTCCAAACCAATCTCTTCCACCCAATATTGCACCCCCCTTCTCCTACCCACAAACATCAACCACCACACAAGCTTGCTTCAATCCACATTCAAACAGACCAAACACAATTACCAGACCTAACCGATTCCTGGACCAACGATGAACTCCTTGCACTTTTGAGAATCAGATCTAGCATGGAAAATTGGTTCCCGGAGCACACGTGGGACCATGTCTCAAGGAAGCTGGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGACGAGAGTAGATATTTCGACAACATTAGCAACTACGGCAAGAACAATTACCGGTTCTTTAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATCCGAGTGGGAGTGGTGGTGGTGGTGATTGTGATGGTGATGATGGGATTGTGAGAAGTGAAGAGACCCTCCACCTGGGAGGAGACAACATGGGCCATCAACAGTGTGATCAAAGAGAAGACAAGGTTGTGGTGGAAAAGTCAAAGGAGCGCAAGAGGAAGAGGCGTGATAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTGTTGTCAACAAGATGATGGCTCAACAAGAAGAGATTCACAACAGGCTCCTCGAGGACATGGTCAAAAGGGATCAAGAGAAGTTCACCAGAGAGGAAGCGTGGAAGAAGCAAGAGATGGACAGAATGAACAAGGAGCTTGAGATCATGGCGCAGGAGCAAGCTATTGCAGGGGATAGACATGCCATCATAATTGAATTCTTAAAGAAATGTGCAACTTCACCATCCCCTCCAAGCAAAAATGCCAAGCACTACAGCACAGACGGTTCAAGTCTTCCAAATAGTTCATTGCACTCTCAAAACCCTAATACTCCTTCCAATGAAGACAACAGCAATCTTGATCCAACACCTTCTCCTAAAATGCTTCTGAATCATGATCAAACTAAGTTGCAAGCAGAAAACCCTAGTTCAAGTGACACATTATTACAAGTTCCTTCCTCCTCCAACTCTTCCCCGACTCCCCACAACCCTAGTTCTTCCCTCAATAGCCATAATAACATCATTCCATTAGAGTCAAATTCAGTTTCCACTTACAAGGCAACCTCAACAACCCCACTAGTCAGCAGTGAGAATTCTAAAGAGGATGTTGGGAGAAGATGGCCAAGGGATGAAGTGTTGGCACTGATAAACCTGAGGTGTACGAGTGTAAGTAACAACAACAATGAAGAGAAAGAAGGAAACAATAAGGGTCCTCTGTGGGAGAGAATCTCTCAAGGGATGTCAGAGCTGGGATACAAGAGAAGTGCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAAGATGTTAACAAGAAAAGGTCCCTCAACTCTAGGACCTGTCCCTATTTCCATCAACTGAGTTGCCTGTATGGTCAGGGAAAAATTGTGTCACCGTCTGAAAGGGAAGGGAACTACATGAGTCCAACCACAAATTCCGGCCAAGTGCCACCGGATGATGATGAAGAAGTGGAAGCTGATGAGTCTTCTCATGTGGGGTAA 1731 0.4587 MFDGAAPDQFHQFISPRTTLPLHLSFPLHASSTPSTTFLPFHHPHNPSQSPHHFPLQTNLFHPILHPPSPTHKHQPPHKLASIHIQTDQTQLPDLTDSWTNDELLALLRIRSSMENWFPEHTWDHVSRKLAELGFKKSAEKCKEKFEDESRYFDNISNYGKNNYRFFSELEELCQNPDPSGSGGGGDCDGDDGIVRSEETLHLGGDNMGHQQCDQREDKVVVEKSKERKRKRRDRFEMFKGFCESVVNKMMAQQEEIHNRLLEDMVKRDQEKFTREEAWKKQEMDRMNKELEIMAQEQAIAGDRHAIIIEFLKKCATSPSPPSKNAKHYSTDGSSLPNSSLHSQNPNTPSNEDNSNLDPTPSPKMLLNHDQTKLQAENPSSSDTLLQVPSSSNSSPTPHNPSSSLNSHNNIIPLESNSVSTYKATSTTPLVSSENSKEDVGRRWPRDEVLALINLRCTSVSNNNNEEKEGNNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVSPSEREGNYMSPTTNSGQVPPDDDEEVEADESSHVG 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01370 576 PANTHER FI21293P1 54 564 - -
Phco11g01370 576 Gene3D - 444 509 - -
Phco11g01370 576 Gene3D - 99 155 - -
Phco11g01370 576 MobiDBLite consensus disorder prediction 211 226 - -
Phco11g01370 576 CDD GT1 442 511 - -
Phco11g01370 576 MobiDBLite consensus disorder prediction 541 576 - -
Phco11g01370 576 FunFam Trihelix transcription factor GTL2 444 509 - -
Phco11g01370 576 MobiDBLite consensus disorder prediction 546 560 - -
Phco11g01370 576 FunFam Trihelix transcription factor GT-2 99 155 - -
Phco11g01370 576 Pfam Myb/SANT-like DNA-binding domain 97 173 IPR044822 -
Phco11g01370 576 Pfam Myb/SANT-like DNA-binding domain 442 530 IPR044822 -
Phco11g01370 576 ProSiteProfiles Myb-like domain profile. 443 504 IPR001005 -
Phco11g01370 576 ProSiteProfiles Myb-like domain profile. 98 150 IPR001005 -
Phco11g01370 576 MobiDBLite consensus disorder prediction 316 442 - -
Phco11g01370 576 MobiDBLite consensus disorder prediction 175 226 - -
Phco11g01370 576 MobiDBLite consensus disorder prediction 318 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01370 Phco-Chr11 10361308 10363452 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco11g01370 Myb_DNA-bind_4 5e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01370 11 10361308 10363452 Phco11g01370 11 10361308 10363452 ECH
Phco11g01370 11 10361308 10363452 Phco6g01122 6 11297610 11299778 PCT