Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01369 ATGCGGCGGATAATAAGGTGGGTGATTAAGAATGAGAAGAGCTCCAACAACGGTGTCGTTTTGCACTTCCTTTGCCAATGTTCAACTTCGCATTCTCCGATTCGTCTCTTCCCTCTACCTTTTGAATCCCTTCTATCCCCTCCCTCAACTTCTCCTTATACCGTCTCAGGAGAGGAAAATCTGTTGCTAACTGATGACATGGAGCAGTATGAAGTGCTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCTGGAGATGGAGCTCCTCTCCAAATTAAGAAACCCATTTATCGTAGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGCGGCGTTATGTTTCCTGAGGAGAAACTATGTAAGTGGCTTGTTCAGCTTCTTATGGCGCTTGATTACTTGCATGTGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATGCGCCTTGGTGATTTTGGACTTGCTAAAATGTTGACTTCGGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCACTTAAGCCTGCATTCAAAGCATTTGATATACAGGCCCTGATTAACAAAATTAATAAGTCCGTAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTGAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGAATCAACATCTTCAGCCTTATGTTCTTAAGGTCCATCTCAAAATCAATAACCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCCAGAATCCAACTACACGAAGAAAACTAGATTTTTGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGGTATAAGTGGCATTCTTTTAGCAATGATAGGACTTTAAATCCCAGCGTATCAGGAGCGGAGCTAGATTCTCTATGCTCTACGCTAGAGATAGACTGTACTCCTCCTGATAATTTAAATAAAAGATTTGCTGAACTTTCTACTGGAGACAACCAGGATTTGATGTCACTCCATAAGTCAGCTGTTCCAAGAGCTGTTTCAAGAACTTCTAGTAATGCCAGGACTCCTATGTTAACTGCATCAAAAGCTTCTGCCAGCCCCAAGAAATCAATGGTATCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAATATGAAACAACCTGTCGATACAACTCGCAGAGCGTCATTGCCATTCCCACGAAGTTGTGCCATTCAGCTGCCTCCTCGCAGGTCCAGTACTGGTTTACTTTGCCATGTAAATTCACCCAATATTTCAGTTAACTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATAAATAGATCTTCACCAAACTCGGCACAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAATGATTCAACTTTGATAGATAAATGCACAATCAAGGTATGTGACACATCCTATGTTAGGCCAGGATGTACAGATGCATGGCAGGGAATCAAGAGCAGCATGCTCAAGAAAAACAATGAGGATAAGAGTGGCTCATCTTATCAAAATGCAACAGCTGGAGCATCAAGCGACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACTTCGTCATTCCAACAAAGGGCAGAGGCATTAGAAGGTTTGCTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGATACGGAGAACTTGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCCGAGAACAACCCACTTAA 2079 0.4281 MRRIIRWVIKNEKSSNNGVVLHFLCQCSTSHSPIRLFPLPFESLLSPPSTSPYTVSGEENLLLTDDMEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHDMRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSVVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVLKVHLKINNPRRSTLPGLWPESNYTKKTRFLKSEDDRVSVSGYKWHSFSNDRTLNPSVSGAELDSLCSTLEIDCTPPDNLNKRFAELSTGDNQDLMSLHKSAVPRAVSRTSSNARTPMLTASKASASPKKSMVSSKNHKTLPVSHNMKQPVDTTRRASLPFPRSCAIQLPPRRSSTGLLCHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSSGSPPCGNDSTLIDKCTIKVCDTSYVRPGCTDAWQGIKSSMLKKNNEDKSGSSYQNATAGASSDNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQPT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01369 692 ProSiteProfiles Protein kinase domain profile. 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01369 692 Gene3D Phosphorylase Kinase; domain 1 50 149 - -
Phco11g01369 692 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 67 642 - -
Phco11g01369 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Phco11g01369 692 MobiDBLite consensus disorder prediction 432 473 - -
Phco11g01369 692 CDD STKc_Nek 69 324 - -
Phco11g01369 692 SUPERFAMILY Protein kinase-like (PK-like) 67 325 IPR011009 -
Phco11g01369 692 Pfam Protein kinase domain 70 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01369 692 FunFam Serine/threonine-protein kinase Nek2 67 149 - -
Phco11g01369 692 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Phco11g01369 692 MobiDBLite consensus disorder prediction 431 473 - -
Phco11g01369 692 Gene3D Transferase(Phosphotransferase) domain 1 150 337 - -
Phco11g01369 692 MobiDBLite consensus disorder prediction 596 620 - -
Phco11g01369 692 SMART serkin_6 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01369 692 FunFam Serine/threonine-protein kinase Nek2 150 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01369 Phco-Chr11 10347999 10354831 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phco11g01369 Pkinase 3.2e-61 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01369 11 10347999 10354831 Phco11g01369 11 10347999 10354831 ECH
Phco11g01369 11 10347999 10354831 Phco6g01121 6 11269806 11276628 PCT