Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01366 ATGGAGAGCGCACGTTATGGCGATAAAACCCTACTGGAATTCTTCAAAGTGTTCCTCATCAACAAAGCTTCTACCCAGTTGCAAATACCAACATCTTTCACCAAGTTCTTCAATGGAATCGCACCATGCAAGATCATTCTTATTGATCACGATGGAAAATGTTGGGATGTTAACTTGGAGAAAATCGAGGGTCGTTTGGTTTTTAAAAATGGGTGGCAGCAATTTGCGAAGGAGAAAAATTTAGAAGAAGGGGACTTTTTGGTTTTTGAGTATGATGGCATGTCTACATTTAATGTGAAGATATTTTCGAAAAGTGGGTGCAGGAAAGGGGCTACACCTCCAAGCCGTGAAAAAATTGTTCCCATTGTGAATTTGGAAGAAGATTCTGATGAGTTTAGTGATAAAATTCAGAGCAATGGTATACGGAAACGCTCACTGCCAAATCCCAAAATAAAAGTGAAATCAGTCTTGGAAGGTGCATGTCCATCTGAAGGAGCTCGGCGCAGATCAAAAAGACTGAAGGAAGAAAAAGATAAACAAAATGACAAGAAACTTGTTCTGACTGAGCATGCTCCATTGCAGAATCCTCATTTTCAAATATATTTTGATGCTCACTGGAGACTGGAAAAAGTGGAAATTCCTAAAAAAGTGATTAAGGAGATGAAAATCAAGTTGAACCGGAATATAACTCTCAGGGATGAGAATGACAGGTCATGGCCGCTGTCGATCATTTCCACAGTGAATCAAGACCGTCATTATTTTGGAGGTGGATGGTTGGATTTCAAGCAGAGCAACAACATTGAAGAAGGGTGTCAATGTGATTTTCAGTTTGTTGTTGACAAAGCAAACGTAGCCAAAGAACTGCTTGTGCGCGTACGTTCGAAGGGTGGACTGCAAATAGTTTAG 906 0.4018 MESARYGDKTLLEFFKVFLINKASTQLQIPTSFTKFFNGIAPCKIILIDHDGKCWDVNLEKIEGRLVFKNGWQQFAKEKNLEEGDFLVFEYDGMSTFNVKIFSKSGCRKGATPPSREKIVPIVNLEEDSDEFSDKIQSNGIRKRSLPNPKIKVKSVLEGACPSEGARRRSKRLKEEKDKQNDKKLVLTEHAPLQNPHFQIYFDAHWRLEKVEIPKKVIKEMKIKLNRNITLRDENDRSWPLSIISTVNQDRHYFGGGWLDFKQSNNIEEGCQCDFQFVVDKANVAKELLVRVRSKGGLQIV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01366 301 MobiDBLite consensus disorder prediction 162 181 - -
Phco11g01366 301 ProSiteProfiles B3 DNA-binding domain profile. 213 296 IPR003340 GO:0003677
Phco11g01366 301 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Phco11g01366 301 CDD B3_DNA 207 270 IPR003340 GO:0003677
Phco11g01366 301 CDD B3_DNA 14 103 IPR003340 GO:0003677
Phco11g01366 301 Coils Coil 163 183 - -
Phco11g01366 301 SMART B3_2 14 105 IPR003340 GO:0003677
Phco11g01366 301 SMART B3_2 197 296 IPR003340 GO:0003677
Phco11g01366 301 PANTHER B3 DOMAIN-CONTAINING 13 281 - -
Phco11g01366 301 SUPERFAMILY DNA-binding pseudobarrel domain 12 107 IPR015300 -
Phco11g01366 301 Gene3D - 7 107 IPR015300 -
Phco11g01366 301 Gene3D - 191 292 IPR015300 -
Phco11g01366 301 MobiDBLite consensus disorder prediction 164 181 - -
Phco11g01366 301 SUPERFAMILY DNA-binding pseudobarrel domain 193 278 IPR015300 -
Phco11g01366 301 Pfam B3 DNA binding domain 210 295 IPR003340 GO:0003677
Phco11g01366 301 Pfam B3 DNA binding domain 14 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01366 Phco-Chr11 10328590 10330592 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco11g01366 B3 7e-11 CL0405