Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01362 ATGGAGAGCGCACGGCCCTGTCATGGAGATAAAGCCCTACAGGAATTCTTCAAAGTGTTCCTCATCAACAAAGCTTCTACCCAGTTGCAAATACCAACATCTTTCACCAAGTTCTTCAATGGAATCGCACCATGCAAGATCATTCTTATTGATCACGATGGAAAATGTTGGGATGTTAACTTGGAGAAAATCGAGGGTCGTTTGGTTTTTAAAAATGGGTGGCAGCAATTTGCGAAGGAGAAAAATTTAGAAGAAGGGGACTTTTTGGTTTTTGAGTATGATGGCATGTCTACATTTAATGTGAAGATATTTTCGAAAAGTGGGTGCAGGAAAGGGGCTACACCTCCAAGCCGTGAAAAAATTGTTCCCATTGTGAATTTGGAAGAAGATTCTGATGAGTTTAGTGATAAAATTCAGAGCAATGGTATACGGAAACGCTCACTGCCAAATCCCAAAATAAAAGTGAAATCAGTCTTGGAAGGTGCATGTCCATCTGAAGGAGCTCGGCGCAGATCAAAAAGACTGAAGGAAGAAAAAGATAAACAAAATGACAAGAAACTTGTTCTGACTGAGCATGCTCCATTGCAGAATCCTCATTTTCAAATATATTTTGATGCTCACTGGAGACTGGAAAAAGTGGAAATTCCTAAAAATGTGATTAAGGAGATGACAATCAAGTTGAACCGGAATATAACTCTCAGGGATGAGAATGACAGGTCATGGCCGTTGTCGATCATTTCCACAGTGAATCGAGACCGTCATTATTTGGGAGGTGGATGGTTGGATTTCAGGCAGAGCAACAACATTGAAGAAGGGTGTCAATGTGATTTTCAGTTTGTTGTTGACAAAGCAAACATAGCCAAAGAACTGCTTGTACGCGTAAGTTCGAAGGGTGGACTACAAATAGTTTAG 912 0.4046 MESARPCHGDKALQEFFKVFLINKASTQLQIPTSFTKFFNGIAPCKIILIDHDGKCWDVNLEKIEGRLVFKNGWQQFAKEKNLEEGDFLVFEYDGMSTFNVKIFSKSGCRKGATPPSREKIVPIVNLEEDSDEFSDKIQSNGIRKRSLPNPKIKVKSVLEGACPSEGARRRSKRLKEEKDKQNDKKLVLTEHAPLQNPHFQIYFDAHWRLEKVEIPKNVIKEMTIKLNRNITLRDENDRSWPLSIISTVNRDRHYLGGGWLDFRQSNNIEEGCQCDFQFVVDKANIAKELLVRVSSKGGLQIV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01362 303 MobiDBLite consensus disorder prediction 166 183 - -
Phco11g01362 303 PANTHER B3 DOMAIN-CONTAINING 13 283 - -
Phco11g01362 303 SUPERFAMILY DNA-binding pseudobarrel domain 16 109 IPR015300 -
Phco11g01362 303 SMART B3_2 199 298 IPR003340 GO:0003677
Phco11g01362 303 SMART B3_2 16 107 IPR003340 GO:0003677
Phco11g01362 303 MobiDBLite consensus disorder prediction 164 183 - -
Phco11g01362 303 Gene3D - 8 109 IPR015300 -
Phco11g01362 303 Gene3D - 193 294 IPR015300 -
Phco11g01362 303 SUPERFAMILY DNA-binding pseudobarrel domain 195 280 IPR015300 -
Phco11g01362 303 Pfam B3 DNA binding domain 212 281 IPR003340 GO:0003677
Phco11g01362 303 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Phco11g01362 303 CDD B3_DNA 209 272 IPR003340 GO:0003677
Phco11g01362 303 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Phco11g01362 303 ProSiteProfiles B3 DNA-binding domain profile. 215 296 IPR003340 GO:0003677
Phco11g01362 303 CDD B3_DNA 16 105 IPR003340 GO:0003677
Phco11g01362 303 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01362 Phco-Chr11 10301164 10307601 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco11g01362 B3 1.6e-10 CL0405