Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01356 ATGGAAAGGGTGTTGTCAGTGGATGAAATATCGGAGCAATATTGGGTGGCAGCGAAGAAGGAATCATGCAAGTTAAAGTCAAACATGAACCGTAGTGAATCGGAATGGGCCTTTCAGCAGTTTCTGCAGGAAGCAGCTTCTCCTTCTTCATCTTCTTCTTCTGATGTTAAGGATCCTGACATCAACATCAACATCCCTGTAACTCTAAATGTTGATTCCCAGGATTACCAAACTATTCTTAAGACCAAGCTTAACCTCGCCTGTGCTGCTGTCGCTTTGACTCGGGCAGTTCCTTCTGAAGTGGGATCGCAGGCTACCTTAAAAGATGCCAAAGCACCAACTGGGATTCCTTGCTCAAATTCCCTGCAAAAGAAGCCTGCAGTTGCAGTGAGGCCAACAATAAGTGGATCATCAAGAGAACAATCAGACGATGAGGAAGCGGAGGAAGAGATTAGTATCACTGAAAACATGAATCCAACTGATGCAAAACGAGTAAGGAGGATGCTTTCTAATAGAGAGTCTGCCAGACGCTCAAGAAGAAGAAAACAGGCTCATTTAAGTGACCTAGAGACACAGGTCTCCCAATTAAGAGGTGAAAATTCTTCTTTGTTAAAGCGCTTAACGGATGTGAGCCAGAGATACAACAGTGCAGCAGTTGACAACAGAGTTTTGAAAGCTGATGTTGAAACATTAAGAGCTAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTTCTGGTTTGAGCCCCATGTTTCATGCCATGACTGAGATGTCATCAATAGAAATACCATTGTTTGATGAAAGTCCTTCTGAGACATCAGCTGGCGCTGCTGTTCCTGTGCAAGAAGACCCAAATCATCAACTCTGTCAAGCCACTTCTAACAATGGGTTCGGAGGCATTTCTTCAATTAAAACTGTGCAGCAGAACGTTACCACAGTGGTTGGTGGGAACAAAACTGGGGGAGAAACTTCCCTGCATAGAGTTGCTAGCTTGGAACATCTTCAGAAGCGGATTCGCGGTGATGAAGATTCACGCGGAGAGCAATAA 1050 0.4429 MERVLSVDEISEQYWVAAKKESCKLKSNMNRSESEWAFQQFLQEAASPSSSSSSDVKDPDININIPVTLNVDSQDYQTILKTKLNLACAAVALTRAVPSEVGSQATLKDAKAPTGIPCSNSLQKKPAVAVRPTISGSSREQSDDEEAEEEISITENMNPTDAKRVRRMLSNRESARRSRRRKQAHLSDLETQVSQLRGENSSLLKRLTDVSQRYNSAAVDNRVLKADVETLRAKVKMAEETVKRISGLSPMFHAMTEMSSIEIPLFDESPSETSAGAAVPVQEDPNHQLCQATSNNGFGGISSIKTVQQNVTTVVGGNKTGGETSLHRVASLEHLQKRIRGDEDSRGEQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01356 349 MobiDBLite consensus disorder prediction 102 158 - -
Phco11g01356 349 Gene3D - 162 217 - -
Phco11g01356 349 PANTHER BASIC LEUCINE ZIPPER 63 1 343 - -
Phco11g01356 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 215 IPR004827 GO:0003700|GO:0006355
Phco11g01356 349 Pfam Basic leucine-zipper C terminal 230 342 IPR020983 -
Phco11g01356 349 SMART brlzneu 159 223 IPR004827 GO:0003700|GO:0006355
Phco11g01356 349 FunFam BZIP transcription factor 161 212 - -
Phco11g01356 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700|GO:0006355
Phco11g01356 349 Pfam bZIP transcription factor 162 213 IPR004827 GO:0003700|GO:0006355
Phco11g01356 349 CDD bZIP_plant_GBF1 164 215 IPR045314 GO:0003700|GO:0006355
Phco11g01356 349 Coils Coil 172 206 - -
Phco11g01356 349 Coils Coil 221 241 - -
Phco11g01356 349 SUPERFAMILY Leucine zipper domain 163 213 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01356 Phco-Chr11 10259314 10262221 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco11g01356 bZIP_C 7.6e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01356 11 10259314 10262221 Phco11g01356 11 10259314 10262221 ECH
Phco11g01356 11 10259314 10262221 Phco6g01115 6 11202546 11209354 PCT