Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01326 ATGGACAGCTCAAGCAAAAAGTTTAGTCCAGAAGACAGAAAAATATCATCAAAGAACTTTGAGCGGAAAAACATCAAGCCATCTCAAACAACCACGGAAGATGTTAAGCCCAAAACCAGTTCACAAGCATCACATTCAACGTTCAGTGAGGTAAAAAAGATCTCTAATTTACCTCGTGGGTCAGCTAAAGGTGGAGAATCTTACCCTGAGAAAGCTTCATCTGCAGGGCCCCGTGGCCAGTTCGAGAATAACACTGTGAAGCCAAGAGCTAAGAAACCCAAGTTACTCACTTCGACGAATCATAATGCAGGAGATATTTGTGTTAAACCTCTGTCAACTCAGGATCAGGATTTGCAGAGTAAAAATGTTGTACCCGGCTGCATCAGTAATACCCGTGCTTATAATGGAAATATTACGATCGCTAGTTCTTCACGTCTAGAAGAAGTTAAAATATCTTTGAATTGTGACTCAGCCTTGTCAGGACTAAACTTCAGTATTCCTGATTTGAACGTTGTTATGAAGTTCATGGACAGGAAGTACCTTAGCTCTTGCAAAACTGTTGACCCTCCATTTTCTACGGCAAAGCTATTGAATGATCTTTGTAGTATTTTTCTCAAGTTGGGGCTTCGAAAGGGATCAAATTCCAACCAAGCCAATTCGCATTCACTACAATACGTTATTCAAGGAGAAAGGAAACCGTTTAATTTTATGAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAATTTGGTAGTGACACCTTGCCAAAGTTTAATTACATACCATACAATACAATATATCAAAGTGCTATTGTAAGTATTTCTTTGGCCCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCATCATCATTGCCTTGTGCGTGTGCTCGGGAAACTGGTGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAAAAGCTTGCGTGACTATGAAGAATGAACCCCAAGAACATCATTATGTGTACTGTCAAGAGTGCCCTTTGGAGAAGTCCAAGAACGAGTACATGCCTGAACGATGCAAGGGGCATATGGTTAGGAAATTTATAAAGGAATGTTGGAGGAAATGCGGATGTGACATGCTTTGTGGGAATCGATTAGTGCAACGAGGTATTACATGCAAATTGCAGGTGTTCTTAACTCGACAAGGTAAAGGTTGGGGCCTTAGAACGTTAGAAGATTTGCCAAAAGGAACTTTTGTATGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGATAGGATAATGGAAGAGAGTTGGAATGAAAGACATACATATCCTTTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTTGGAAGGTTCATCAATCATAGATGTTATGATGCAAATCTCATAGACATTCCCGTTGAAATAGAGAGTCCAGATCACCATTATTATCATCTTGCCTTCTTTACCAACAAGAATGTGAGTGCATATGAGGAATTGACATGGGATTATGGTATTGATTTTGATGATGAAGATCATCCTATTAAAGCATTTCGGTGTTCTTGTGGAAGCACCTTATGCCGGGATAAGAAACAAAAAGGGAAAGGAAAAATGAAAAAATGA 1695 0.3923 MDSSSKKFSPEDRKISSKNFERKNIKPSQTTTEDVKPKTSSQASHSTFSEVKKISNLPRGSAKGGESYPEKASSAGPRGQFENNTVKPRAKKPKLLTSTNHNAGDICVKPLSTQDQDLQSKNVVPGCISNTRAYNGNITIASSSRLEEVKISLNCDSALSGLNFSIPDLNVVMKFMDRKYLSSCKTVDPPFSTAKLLNDLCSIFLKLGLRKGSNSNQANSHSLQYVIQGERKPFNFMSDITKGSEKVKISLIDEFGSDTLPKFNYIPYNTIYQSAIVSISLARISDEGCCSDCSGDCLSSSLPCACARETGGEFAYTPQGLLKEEFLKACVTMKNEPQEHHYVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCDMLCGNRLVQRGITCKLQVFLTRQGKGWGLRTLEDLPKGTFVCEYVGEILTNMELYDRIMEESWNERHTYPLTLDADWGSEKGLKDEEALCLDATYNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHLAFFTNKNVSAYEELTWDYGIDFDDEDHPIKAFRCSCGSTLCRDKKQKGKGKMKK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01326 564 SMART set_7 395 535 IPR001214 GO:0005515
Phco11g01326 564 SMART preset_2 237 379 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco11g01326 564 FunFam SET-domain containing protein lysine methyltransferase family protein 240 554 - -
Phco11g01326 564 Pfam SET domain 407 529 IPR001214 GO:0005515
Phco11g01326 564 Gene3D SET domain 240 554 IPR046341 -
Phco11g01326 564 MobiDBLite consensus disorder prediction 1 21 - -
Phco11g01326 564 CDD SET_SETDB-like 261 529 - -
Phco11g01326 564 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 77 564 IPR025776 -
Phco11g01326 564 ProSiteProfiles SET domain profile. 395 529 IPR001214 GO:0005515
Phco11g01326 564 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 33 561 - -
Phco11g01326 564 MobiDBLite consensus disorder prediction 22 54 - -
Phco11g01326 564 ProSiteProfiles Pre-SET domain profile. 289 392 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco11g01326 564 Pfam Pre-SET motif 240 387 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco11g01326 564 MobiDBLite consensus disorder prediction 1 99 - -
Phco11g01326 564 SUPERFAMILY SET domain 247 552 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01326 Phco-Chr11 10025410 10031313 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco11g01326 Pre-SET 7.9e-16 No_clan