Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01324 ATGGGCTGCAAAAGAGGCATCTTGCGTGGACTTACAAAACTGATTCACTTGGGAGACTCGAGAGCTATGTCTTCATCTTCTCGTGTTCTTCCCACTCCCCTTGAAAACAAGTATATGAAACCCCCAGATTCTTGTCATCTTTCACCTGCCAGTGATCTGGCTGCGAATTCTGTCTCATCAAATTCAATCAGAAGTGCTGCGAATCCTGATGGCACCCTTTTTTCCTATGCTTCACAGCAAGATAAGCAATTTGAAGATTCCCCCTTTGTTCCTCGGACACTGGGTGACAATGTGTCTTCCGAAATACACTCAACAACATTCATTTCTCACCCTCATGAAAACGAAGATATTACCTGGGGACCAGATCCATTTCAGGATATTATTGGGTTTCCCGAAAATATTTCTGCCCAGCATGATCAGGTGGTAGAGAATGGCTGTTACATAAATGATGATAACGTCAAAAGAACCGATTTTGGGGAGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTCACCCAAACTGGAGTCAGCTTCTTGGTGATGACAATGTAGCAGAACCAAAACCAAAGGTTCCTCAGCTGCTTGATATACCATCTGGAGAAGTTGTTGGCAATTCAGCAGCAACCACACCACAGACTAAGACTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTCAATCAACTTGGTGGTAGTGAGAGGGCTACTCCGAAGGGTGTGTTGAATGTAATGAAAGTTGATGGCCTTACCATCTATCATGTAAAAAGCCACTTGCAGAAGTATAGAACTGCCAGATACAAACCAGAGCCATCAGAAGGAACGTCTGAGAAAAAGGCGACTCCAATAGAAGAAATGAAATCTCTAGACTTAAAAACGAGTAAAGGGATCACTGAAGCATTACGATTGCAGATGGAACTCCAGAAGCGACTCCACGAGCAACTTGAGATCCAAAGAAAGTTGCAGATTCAAATTGAAGACCAGGGAAAACGTCTTCAGATGATGTTTGAGAAACAAAGAGAGATGGGTGACAAGAAGGTTAATGGCTCATCCGGTGAGGCTGCCGCTCCATCAGAAAGTGTGCTTCCTTCTTCTCCTCCAGTAGAAACCTCAAATGAGGGACGTGAGAAAAGCATGCAAGAAGAGAAGGAAGAAAGCACAAAGCAAAAGGCAAGTGAAGGTGAAGAAGTAATGAATGAAGATGAAGATGAAGTTGCACCAGCTACAAAGCGGGTGAAAAGTTCATAA 1263 0.4363 MGCKRGILRGLTKLIHLGDSRAMSSSSRVLPTPLENKYMKPPDSCHLSPASDLAANSVSSNSIRSAANPDGTLFSYASQQDKQFEDSPFVPRTLGDNVSSEIHSTTFISHPHENEDITWGPDPFQDIIGFPENISAQHDQVVENGCYINDDNVKRTDFGEWVDQLMSIDDSLHPNWSQLLGDDNVAEPKPKVPQLLDIPSGEVVGNSAATTPQTKTRMRWTPELHEAFVEAVNQLGGSERATPKGVLNVMKVDGLTIYHVKSHLQKYRTARYKPEPSEGTSEKKATPIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGDKKVNGSSGEAAAPSESVLPSSPPVETSNEGREKSMQEEKEESTKQKASEGEEVMNEDEDEVAPATKRVKSS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01324 420 Gene3D - 214 273 - -
Phco11g01324 420 NCBIfam myb-like DNA-binding domain, SHAQKYF class 215 269 IPR006447 GO:0003677
Phco11g01324 420 MobiDBLite consensus disorder prediction 269 292 - -
Phco11g01324 420 MobiDBLite consensus disorder prediction 379 400 - -
Phco11g01324 420 MobiDBLite consensus disorder prediction 358 378 - -
Phco11g01324 420 Coils Coil 303 323 - -
Phco11g01324 420 Pfam Myb-like DNA-binding domain 217 268 IPR001005 -
Phco11g01324 420 SUPERFAMILY Homeodomain-like 213 269 IPR009057 -
Phco11g01324 420 MobiDBLite consensus disorder prediction 345 420 - -
Phco11g01324 420 Pfam MYB-CC type transfactor, LHEQLE motif 302 346 IPR025756 -
Phco11g01324 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 272 IPR017930 -
Phco11g01324 420 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 207 396 IPR044848 GO:0003700
Phco11g01324 420 FunFam Myb family transcription factor 214 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01324 Phco-Chr11 10015814 10019326 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco11g01324 Myb_DNA-binding 1.7e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01324 11 10015814 10019326 Phco11g01324 11 10015814 10019326 ECH
Phco11g01324 11 10015814 10019326 Phco6g01085 6 10944560 10953965 PCT