Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01304 ATGGAGGGAGGGCTTCTTCTTTTTATTTTCTTGCTGTTGGTTATGGTGCTCTCTGTCTTTGCCGTAGAAGTCGAATATTCACACTGCAATTGTGATGAGGAAGGGCTTTGGAGCATCCACAACGTCCTTGTTTGCCAGAAAGTGAGTGACTTTTTCATCGCCATTGCATATTTTTCCATTCCCCTTGAGCTCCTTTACTTTGTCAGTCGCTCCAATGTCCCCTTTAAATTGGTCTTCCTTCAATTCATTGCCTTCATAGTTCTCTGTGGATTGACCCATTTACTCAACGCCTATACTTACTATGGCCCCCACTCCTTCCGGTTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCTCTTGTCTCCTGTGCCACTGCCATTTCCTTTCCCACCCTCATACCTCTTCTGCTGAAAATTAAAGTGAGAGAGCTCTTCTTGAGGCAGAATGTGTTGGAATTGGGCCAAGAGGTTGGGATTATGAAGAAACAGAAGGAAGCTAGTTGGCATGTTAGGATGCTCACCTGTGAGATTAGGAAGTCTCTGGATAAGCATACCATCTTGTATACCACACTTGTTGAGCTTTCCAAGACCTTGGACTTGCACAATTGTGCAGTTTGGATGCCTGATGATGATAGGGGAGAAATGCTTTTAACACATGAGTTGAAATCAAACTCAGCAAGTAGATTTCACAATTCTATTCCTATTAGTGATCCGGATGTGTTGGACATAAAGAAGAGCATAGGGGTGTGGATTTTGAGGCCTGATTCGGCACTAGGAGCTGCAAGTAGAGGTGGTGGATCTGGGGATTCAGGTGCCGTAGCAGCCATCCGCATGCCAATACTTCATGTTTCCAATTTCAAAGGAGGGACACCAGAGTTGGTTGAGACATCTTATGCTATACTGGTTTTGGTTCTTCCAAATTCAAACGCCAGGGCTTGGACCTCCCATGAAATAGAGATAGTGGAAGTGGTTGCTGACCAGGTGGCTGTGGCATTATCTCATGCGTCTGTCCTTGAAGAGTCTCAGCTTATGAGCCAGAAACTTGCAGAGCAAAACCGGGCATTGCAACATGCTCAGCAGAATGCAATGATGGCCAGGAAGGCAAGGAGCTCGTTTGAGAAAGTTATGAGTCATGGAATGCGGAGGCCAATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAATATAAGGCCTGAACAGAAGATTATTATTGACTCAATTTTCAAAGTTAGTAATGCCCTATCACGATTGATTAATGATGTGATGGAGATTTCCACGAATGGCAATGGAAACTTCCGGTTAGAGATGAAACCTTTCAATCTGCATTCAATGATGAGGGAAGTTTCTTGCACTACCAAGTGTTTGTGCATATATAAAGGCTTTGGTCTTGAAGTTGATGTTGACAAGACTTTGCCTGATCTGGTAGCTGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAACATATGTGACAAAGGAACGCTTATATTTAAAGTTTATCTTGAAAGTAGTAGTGGAGATAAAGATGATAGAAGCTTTGGAATATGGAGATCAAGCATGCAAAATGATTATGTACATATAAAATTTAATTTTCGAATAAATGGCGTTAGTTCCCAGTCAGATGAATCGTCTTCAACAGCAAATTATTCTGCTGGTAGAAGGCACCACAACAATGAACCTAAGGAAGGTCTGAGCTTCAGCATGTGCAAAACGCTAGTGCAGATGATGCAAGGTAATATTTGGATCTCAACTAACTCTCTGGGTGTGACAGAAGGAATGACACTTCTTCTCAGGTTTCCGAAAGGGTCATCTCATGGAAGATCCATTCTTGCTCCTAAAGATTTTTCAAACTCCCAGTTTAGAGGGCTTAAGGTTGTGTTAGCTGATGATGATGATGTAAACAGGACTGTGACCCAGAAGCTGCTTGAGAAACTGGGGTGTCAAGTAACTGCTGTTTCATCAGGATTTGAATGTCTTGGTGCTATAAGTGCCTCTGGTAACTCGTTCAAAATTATTCTATTGGATCTTCACATGCCTGAAATGGATGGCTTTGAAGTTGCAAGAAGGATTCGAAAATTCCAAAGCCGTAATTGGCCCTTGATCGTAGCTTTGACTGCAAGTGCAGAAGAACACATCAAGGAGAGATGTCTCCAGGTGGGAATGAATGGTTTGATTCAAAAACCTATCCTCCTTCATGAGATAGCAGATGAACTTCGAACAGTCCTGCAACGTGCTGGTGAAAAATTGTGA 2283 0.4253 MEGGLLLFIFLLLVMVLSVFAVEVEYSHCNCDEEGLWSIHNVLVCQKVSDFFIAIAYFSIPLELLYFVSRSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFRLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQKEASWHVRMLTCEIRKSLDKHTILYTTLVELSKTLDLHNCAVWMPDDDRGEMLLTHELKSNSASRFHNSIPISDPDVLDIKKSIGVWILRPDSALGAASRGGGSGDSGAVAAIRMPILHVSNFKGGTPELVETSYAILVLVLPNSNARAWTSHEIEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQHAQQNAMMARKARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRPEQKIIIDSIFKVSNALSRLINDVMEISTNGNGNFRLEMKPFNLHSMMREVSCTTKCLCIYKGFGLEVDVDKTLPDLVAGDEARSFQVILHMIGYLLNICDKGTLIFKVYLESSSGDKDDRSFGIWRSSMQNDYVHIKFNFRINGVSSQSDESSSTANYSAGRRHHNNEPKEGLSFSMCKTLVQMMQGNIWISTNSLGVTEGMTLLLRFPKGSSHGRSILAPKDFSNSQFRGLKVVLADDDDVNRTVTQKLLEKLGCQVTAVSSGFECLGAISASGNSFKIILLDLHMPEMDGFEVARRIRKFQSRNWPLIVALTASAEEHIKERCLQVGMNGLIQKPILLHEIADELRTVLQRAGEKL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01304 760 Coils Coil 342 369 - -
Phco11g01304 760 SMART REC_2 634 749 IPR001789 GO:0000160
Phco11g01304 760 MobiDBLite consensus disorder prediction 548 564 - -
Phco11g01304 760 FunFam Ethylene receptor 4 336 430 - -
Phco11g01304 760 ProSiteProfiles Histidine kinase domain profile. 376 614 IPR005467 -
Phco11g01304 760 Gene3D - 360 435 - -
Phco11g01304 760 SMART gaf_1 183 343 IPR003018 GO:0005515
Phco11g01304 760 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 757 - -
Phco11g01304 760 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
Phco11g01304 760 Gene3D - 634 759 - -
Phco11g01304 760 Pfam Response regulator receiver domain 636 748 IPR001789 GO:0000160
Phco11g01304 760 CDD HATPase_ETR2_ERS2-EIN4-like 475 608 - -
Phco11g01304 760 Pfam GAF domain 185 333 IPR003018 GO:0005515
Phco11g01304 760 SUPERFAMILY GAF domain-like 186 336 - -
Phco11g01304 760 Gene3D - 436 614 IPR036890 -
Phco11g01304 760 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Phco11g01304 760 PIRSF Ethylen_sen_hybr_HK 4 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Phco11g01304 760 FunFam Ethylene receptor 632 756 - -
Phco11g01304 760 CDD HisKA 368 429 IPR003661 GO:0000155|GO:0007165
Phco11g01304 760 CDD REC_ETR-like 634 749 - -
Phco11g01304 760 SUPERFAMILY CheY-like 630 755 IPR011006 -
Phco11g01304 760 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 438 611 IPR036890 -
Phco11g01304 760 MobiDBLite consensus disorder prediction 548 573 - -
Phco11g01304 760 Gene3D - 171 344 IPR029016 -
Phco11g01304 760 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 435 IPR036097 GO:0000155|GO:0007165
Phco11g01304 760 Pfam His Kinase A (phospho-acceptor) domain 370 434 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01304 Phco-Chr11 9797339 9800333 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco11g01304 GAF 3.9e-12 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01304 11 9797339 9800333 Phco6g01562 6 16966773 16969606 ECH
Phco11g01304 11 9797339 9800333 Phco11g01304 11 9797339 9800333 ECH