Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01300 ATGATGGCTGAAATCTTAATGATTCTGATGCTTGGGCTTGGGCTTGAACTTTCAAGTGAAGAAGAGAAGAGAAAATTCAAGCATTACAAAATGTTCAAGCTATCTCGCGTGCTTCATCTCACTACCACTTCTAGGCATAGGCTGTTGGAAGTGTTGTCATCTAGGAATGTTGAAGTTGGAGACTTTCTTCGGGATAGGCGCGATTTTACCTACTCAGCTGGCATTTCTACTGCTACAAATAATTATGCTGCCAAAGGATATGCTTCGGATCGTATATTTGCCCCTTATACTGTTTATAAGGGCAAAGCGGCATTCTCGTTGAGTCCTTGTCTTCCAACTTTTACTAAGTTGGATTCCGGGACTGTTGTAGTTGATCGACGTGGTTCAATGATGATAACTTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCCGCCACTGAAGTTGGTTCTTTGATAACGATGGGTTCTCAAGATTCCTCTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTAATGCAAACAGCAATGGATACTTTGTGTCATTGACTGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCAGCAATCCAGAGGCACAGTGGGCCTTCAACAGAAGGGTGGCTCTCAAGTTTTAGACTTGGAATGGGAAAAATGA 822 0.4185 MMAEILMILMLGLGLELSSEEEKRKFKHYKMFKLSRVLHLTTTSRHRLLEVLSSRNVEVGDFLRDRRDFTYSAGISTATNNYAAKGYASDRIFAPYTVYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSMMITFMHSIGERKYDWEKRQRFALSATEVGSLITMGSQDSSEFFHDPSMLSSNAGQVRKSLSIKPNANSNGYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTACSFALPHIMGWDQITNQQSRGTVGLQQKGGSQVLDLEWEK 273
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01300 273 Pfam Whirly transcription factor 98 232 IPR013742 GO:0003697|GO:0006355|GO:0006952
Phco11g01300 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 67 273 IPR013742 GO:0003697|GO:0006355|GO:0006952
Phco11g01300 273 Gene3D Transcriptional Coactivator Pc4; Chain A 82 255 IPR009044 GO:0003677|GO:0006355
Phco11g01300 273 SUPERFAMILY ssDNA-binding transcriptional regulator domain 89 251 IPR009044 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco11g01300 Phco-Chr11 9766938 9769947 Transposed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Phco11g01300 Whirly 1.6e-53 CL0609