Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01293 ATGGAGTCAAATAAGCAGTGGAAGGAAGAAGGGTGTTCAAGGTCAAGAATCACAGCACTGATTGTGGATGACGATGCTATGATTCGGAAAATCCACAAGACGATGTTGGAGCGGTTATTTAACATGGACGCAAAAACGGTTAATGATGGAAAGGAAGCAGTGGATCTGCATCGATGTGGGGCGAATTTTGACATAATTTTCATGGACAAAGAAATGCCCATCATGGATGGTCATGAGGCCACAAAAGAGCTACGTGGTATGGGTGTTAAGAGCTTGATTGTGGGAATTACTACGCGTACTGATGGTAAAGATGCAGAAGACTTTTTAGGTGCAGGATCCAACTATTGCTTTGAAAAACCTCTTGATCGAACAAAGGTTGAACAAGTCTTGCAAGACCATCCAAATTTTACAACTTGA 417 0.4197 MESNKQWKEEGCSRSRITALIVDDDAMIRKIHKTMLERLFNMDAKTVNDGKEAVDLHRCGANFDIIFMDKEMPIMDGHEATKELRGMGVKSLIVGITTRTDGKDAEDFLGAGSNYCFEKPLDRTKVEQVLQDHPNFTT 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01293 138 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 132 - -
Phco11g01293 138 Gene3D - 1 135 - -
Phco11g01293 138 SMART REC_2 17 130 IPR001789 GO:0000160
Phco11g01293 138 ProSiteProfiles Response regulatory domain profile. 18 134 IPR001789 GO:0000160
Phco11g01293 138 SUPERFAMILY CheY-like 15 133 IPR011006 -
Phco11g01293 138 CDD REC_hyHK_CKI1_RcsC-like 20 130 - -
Phco11g01293 138 Pfam Response regulator receiver domain 20 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01293 Phco-Chr11 9669723 9670261 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco11g01293 Response_reg 4.6e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01293 11 9669723 9670261 Phco11g01293 11 9669723 9670261 ECH