Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01265 ATGACAAGAGGGGGGTGGTGTGGCTTAGCTAGGCTGGACCCTAGCACAAGACGCGTAGATGGATTCCGTGAGCACCACGTGTACGGCTCTGGTGACGTTGGAATAAACAAATGGCCACCTCAACCAACAACCACACCCACACCGTATATACGCTCTTCTATACGTATACGCCGAATTCCACATACGACACGTGTGTGCTCACCCCCCCGCCCCCCCTTTCTTGAGTTGATTTATCAGTTAAGACATTTTTCCAGAAGTAACAAAGCTGCTTATATTAGTAGTGCTCTCTATTTGGAGCTTACAATGGGAAACAATGAGGAAGAGAAATCTACCAAGAATGAAAAGCCTTCTTCACCTGTAACAATGGATCAGGCCAATCACACCAACCAGCCCAATATTCATGTATATCCTGATTGGGCAGCCATGCAGGCATATTATGGGCCAAGAGTCACCATGCCACCATACTACAACTCGGCTGTGGCTTCTGGTCATGCTCCTCACCCATACATGTGGGGTCCACCACAGCCTATGATGCCACCTTATGGGCCTCCTTATGCAGCAATTTATTCACATGGAGGGGTTTACCCTGCAGTTCCAATCGGGCCACATACACATGGTCAAGGAATTCCGTCTTCACCGGCTGCTGGGACTCCTTTAAGCATGGAGACACCACCCAAATCATCAGGAAATACTGATCAGGGTTTAATGAAGAAATTGAAGGAGTTTGATGGACTTGCAATGTCAATAGGCAATGGCCATAATGAAAGTGTAGAGCGTGGAGGTGAAAACAGGCTGTCACAGAGTGTGGATACTGAGGGTTCCAGTGATGGAAGTGATGGCAGCACTTCAGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGAGGGAACACCAACCACTGATGGAGAAGGGAAACCTGAGATACAAAGCAGTCCCATTTCCAAAGATACTGCAGCTTCTAATAAGATCGTGGCAGTTGCCCCTGCCAGTGTTGCAGGAACAATAGTTGGACCTGTAGTTTCTTCAGGTATGACCACCGTGCTGGAGCTGAGAAATCCTTCCAGTGTTCATTCTAAAGCAAATACCACAAGTGCCCCACAACCTTCTGTATTACCTGCAGAAGCTTGGTTACAGAATGAGCGTGAGCTGAAACGAGAGAGGCGTAAACAATCTAACAGAGAATCTGCTAGAAGGTCCAGACTCAGGAAGCAGGCTGAAACTGAAGAGCTGGCACGAAAAGTTGAATCCTTGAATACTGAGAATGAGACACTGAAATCAGAAATAAATCGGCTGACTGAAAGTTCTGAGAAAATGAGGGTGGAAAATTCAACATTGAGGGAAAAACTTAAAAATGCTCAACTGGGACAAACACAAGAGATAACTTTGAACATAATTGACAGCCAGAGGGCTACACCTGTAAGCACAGAAAACTTACTATCTAGAGTGAATAATAATTCCAGTTCTAACGATAGAACTGTGGAGGATGAGAATGGTTTTTGTGAAAATAAACCAAACTCTGGTGCAAAGCTGCATCAACTACTGGACACAAGTCCTAGAGCTGATGCTGTGGCAGCTGGTTGA 1581 0.4592 MTRGGWCGLARLDPSTRRVDGFREHHVYGSGDVGINKWPPQPTTTPTPYIRSSIRIRRIPHTTRVCSPPRPPFLELIYQLRHFSRSNKAAYISSALYLELTMGNNEEEKSTKNEKPSSPVTMDQANHTNQPNIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPHPYMWGPPQPMMPPYGPPYAAIYSHGGVYPAVPIGPHTHGQGIPSSPAAGTPLSMETPPKSSGNTDQGLMKKLKEFDGLAMSIGNGHNESVERGGENRLSQSVDTEGSSDGSDGSTSGANQTRRKRSREGTPTTDGEGKPEIQSSPISKDTAASNKIVAVAPASVAGTIVGPVVSSGMTTVLELRNPSSVHSKANTTSAPQPSVLPAEAWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLNTENETLKSEINRLTESSEKMRVENSTLREKLKNAQLGQTQEITLNIIDSQRATPVSTENLLSRVNNNSSSNDRTVEDENGFCENKPNSGAKLHQLLDTSPRADAVAAG 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01265 526 MobiDBLite consensus disorder prediction 483 526 - -
Phco11g01265 526 MobiDBLite consensus disorder prediction 378 406 - -
Phco11g01265 526 MobiDBLite consensus disorder prediction 201 234 - -
Phco11g01265 526 Coils Coil 400 448 - -
Phco11g01265 526 FunFam G-box binding factor 3 383 438 - -
Phco11g01265 526 Pfam G-box binding protein MFMR 102 197 IPR012900 -
Phco11g01265 526 MobiDBLite consensus disorder prediction 107 131 - -
Phco11g01265 526 PANTHER G-BOX-BINDING FACTOR 3-RELATED 102 495 IPR044827 GO:0003700|GO:0006355|GO:0043565
Phco11g01265 526 MobiDBLite consensus disorder prediction 354 406 - -
Phco11g01265 526 MobiDBLite consensus disorder prediction 210 234 - -
Phco11g01265 526 MobiDBLite consensus disorder prediction 261 287 - -
Phco11g01265 526 MobiDBLite consensus disorder prediction 247 316 - -
Phco11g01265 526 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 382 445 IPR004827 GO:0003700|GO:0006355
Phco11g01265 526 Gene3D - 383 439 - -
Phco11g01265 526 MobiDBLite consensus disorder prediction 354 369 - -
Phco11g01265 526 SUPERFAMILY Leucine zipper domain 383 438 IPR046347 GO:0003700|GO:0006355
Phco11g01265 526 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 387 402 IPR004827 GO:0003700|GO:0006355
Phco11g01265 526 CDD bZIP_plant_GBF1 385 433 IPR045314 GO:0003700|GO:0006355
Phco11g01265 526 Coils Coil 373 393 - -
Phco11g01265 526 SMART brlzneu 380 444 IPR004827 GO:0003700|GO:0006355
Phco11g01265 526 Pfam Disordered region downstream of MFMR 232 360 - -
Phco11g01265 526 MobiDBLite consensus disorder prediction 115 131 - -
Phco11g01265 526 Pfam bZIP transcription factor 380 442 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01265 Phco-Chr11 9513280 9519256 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco11g01265 MFMR_assoc 2.1e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01265 11 9513280 9519256 Phco1g00647 1 5875077 5878241 PCT