Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01223 ATGGAATCAGAAACCCAAAGAAAAATTGAGGAAACAGTGTTGGACATACTCAACAAATCCAACATGGAAGAAGCCACTGAGTTCACCATTCGACTCACTGCCTCGGACCGACTCGGAATCGACCTCTCTGACCCCACCAGTAAACACTTTGTCAGAGGTATCGTTGAGTCCTATCTTCTCTCCGCTATGGCCAATGGAAAGGCGGAGAAGAAGGAAAATGTCGTTGACGAAATGGAGGTGATGAAATTGAGGAGGGAAGATCCTGAACGCGTTATTTGTCATCTGTCAAACAGGAGGAACGTGGCTGTGAAAACATTCAAAGGGATATCACTGGTCTCAATTAGGGAGTTTTATATGAAAGATGGAAAACTACTTCCTGGTTCTAAAGGTATAAGTTTACCTTCTGAACAATGGTCAATCTTCAAGAAGAGTGTTCCTGCCATAGAAGAAGCTATCATAAAGATGGAAGGAAGGATAAGATCGGAGCTTAATGGTAAACAAAATGGAGATGGGTCAAATTCAGTTCCTCTTGAGCCTGTTGTCCCTGTTCCTCCACTTGAGCCTATAGCCCCTATTGAAGTTGTCCGTTTTGATGGGAAGAATTTCCAATTCTGGGCTCAGCAGATGACATTATTATTGAAACAATTAAAGATTGAATATGTGCTAATTGAACCATGCCCGAATGCTGCATTAGGGGAAGGTGCAAAGGCTGAAGACCTTGTCACAGCCAAGGCTGCAGAAAGGAGATGGTTGAATGATGATTTAGTGTGTTGTCGTAATATCTTGAGCCATTTATCTGATCCTCTTTTCAACCAGTATGCGAACAGAAAAATGACCAGCAAGGAGTTATGGGAAGAGCTAAATCTGGTTTATCTCTTTGAGGAATTTGGAACCAAGAGATCTATAGTGAAAAAGTATATTGAATTTCAGATAGTTGATGAAAAAACAGTGAGCGACCAAATCCGAGACCTAAATGGCATTGCAGATTCTATTGCTGCTTCTGGAATATTCATGGATGATAACTTTCATGTTAATGTCATCATTTCAAAGCTTCCACCATCGTGGAAGAACTTCTGCATCAAGTTATTGCGTGAGGAATATCTACCTTTCTGGAAGTTAATGGAATGTATACAGATAGAGGAAGAATTTCGGTGTGGAGTACGACGAGTGGGTGAACATTCTGACAGTGTGGGATTTCACCAGGACAATAGAGGTGGTGGACAGAGGAGGGTTGACTATAAGCCTCTAGGAATGTGTAGGAATAGGCCAGAAATCAATGCCAGGAGTATACCCTGTAATGTATGTGGCAAGAGAGGACATCTTTCTAAAAATTGCTGGAGAAGAAGTGACAAGCAAACTAATGAGAGGAAAGCAGAAGAGGATGTGAGCGCACCTACTACAGAAATTGGTATTGTGGCTGCTACCCCTACCCTTACCCAGTAA 1443 0.42 MESETQRKIEETVLDILNKSNMEEATEFTIRLTASDRLGIDLSDPTSKHFVRGIVESYLLSAMANGKAEKKENVVDEMEVMKLRREDPERVICHLSNRRNVAVKTFKGISLVSIREFYMKDGKLLPGSKGISLPSEQWSIFKKSVPAIEEAIIKMEGRIRSELNGKQNGDGSNSVPLEPVVPVPPLEPIAPIEVVRFDGKNFQFWAQQMTLLLKQLKIEYVLIEPCPNAALGEGAKAEDLVTAKAAERRWLNDDLVCCRNILSHLSDPLFNQYANRKMTSKELWEELNLVYLFEEFGTKRSIVKKYIEFQIVDEKTVSDQIRDLNGIADSIAASGIFMDDNFHVNVIISKLPPSWKNFCIKLLREEYLPFWKLMECIQIEEEFRCGVRRVGEHSDSVGFHQDNRGGGQRRVDYKPLGMCRNRPEINARSIPCNVCGKRGHLSKNCWRRSDKQTNERKAEEDVSAPTTEIGIVAATPTLTQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01223 480 MobiDBLite consensus disorder prediction 447 463 - -
Phco11g01223 480 Pfam Transcriptional Coactivator p15 (PC4) 93 143 IPR003173 GO:0003677|GO:0006355
Phco11g01223 480 SUPERFAMILY ssDNA-binding transcriptional regulator domain 92 154 IPR009044 GO:0003677|GO:0006355
Phco11g01223 480 ProSiteProfiles Zinc finger CCHC-type profile. 432 445 IPR001878 GO:0003676|GO:0008270
Phco11g01223 480 Gene3D Transcriptional Coactivator Pc4; Chain A 84 160 IPR009044 GO:0003677|GO:0006355
Phco11g01223 480 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 158 IPR045125 GO:0003713|GO:0060261
Phco11g01223 480 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Phco11g01223 480 Pfam DEK C terminal domain 5 59 IPR014876 -
Phco11g01223 480 MobiDBLite consensus disorder prediction 447 480 - -
Phco11g01223 480 Pfam gag-polypeptide of LTR copia-type 250 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01223 Phco-Chr11 9188898 9191703 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Phco11g01223 Retrotran_gag_2 2.5e-13 CL0523