Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01221 ATGAAGGTTGACGCGGGGTTAGGGAGCGTGGCGTGGGACGAAGAGGATAAGGCCATGGTTGGGGCTGTTCTTGGTGGTCGAGCTCTGGAGTTCTTAACGACAAACTCGGTGTCGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGACGAGGGACTTCAGAACAAGCTCTCGGATCTGGTGGAGCGTCCCAACGACTCAAATTTCAGTTGGAACTACGCGATTTTCTGGCAGCTCTCGCAGTCGAAATCTGGTGACTGGGTTCTGAGTTGGGGAGACGGGTGCTGCAGGGAGCCCAACGAGGAAGAGGAGGGTGCGCTGAGAGGAAAGCTGACTCTTCTTCGCGTGGACGAGGAGATGCAGCAGAGGATGAGGAAGGTGGTGTTACAGAAGCTGCACACTACTTTTGGAGGTTCTGAGGAGGACAATTACGCCTTTGGCCTTGACCACGTGACCGACACGGAGATGTTCTTCCTTGCTTCCATGTACTTCTCTTTCCCTCGTGGGTATGGTGTCCCAGGTAAGTGCTTCGTCTCTGGGAAGCATTTGTGGCTGAAATCTGTGCCTGATTTCTGCGTGCGTTCTTCCTTGGTTAAATCCGCGGGAATTCAGACCATTGTTATGGTCCCTACTGATTTGGGAGTGGTGGAGTTGGGTTCTGTGAGAGTGTTACCCGAGAACTTTGAACTCGTGCAGGCCGTTAAGTCTGTATTCTCCACGCAGTGTTCGCAGTACTCTGGGGTGAACTTGAGCGCGGGTGGGAATGCGGTTTTTACCGGTTTGGCAATTGGGGATGGTAATAAGGTAGATGGAGGTGTTCCAATTCCCAAGCTTTTTGCGAACGCAATAGGCAATCGGACGCATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGAAGATAACAGGCCTTGGGCAGGCCATGCTCTCCCCAATGGGAACAACCTTAACAACAATCCGAATGTAAGGAATGGTCTTCATGTTACGGGTTGGGCAGTGAATTCGGGTGCGAAGCAGGTTGGTCCCGTTGAGATTTTTGCTCCCAGGGCATCGATGAGCAGTGTTGTTGCGGAGCTGGCTAATGGTGTTAGACAGGATTTCAGGCTGGGCAACAGCTATCAATCTCAAAGGCAGGTGCAAATGCAAATTGACTTTAGCGGAGCCACTTCTAGGCCTTCTCATGTGAGGCCGGCTGTTGGTGATTCTGAGCTTTCTGATGTCGAGGCCTCTTGCAAGGAGGAGCAACCCAGTGTTTTGGATGAAAGGAAGCCCAGGAAGCGGGGTAGGAAGCCTGCTAATGGAAGGGAAGAACCCCTCAATCATGTGGAGGCCGAGAGGCAGAGACGTGAGAAGCTCAACCAACGGTTCTATGCATTGAGATCTGTGGTCCCTAATATCTCCAAGATGGACAAAGCTTCGTTGTTGGGCGATGCCATTGCCTATATCAACGAGCTTCAGGCGAAAGTCAAGATCATGGAGGATGAAAGAGAGAGATTTGGAAGCACCTCGAAAGATGGATCAGTTTTGGAAGATAACTCAAGATCTGAAAATCAAAATCAAGAGAAGGAAGCTCCTGATGTGGATATTCTAGCAGCTCAAGATGAGGTAACTGTAAAGGTGAGTTGCCCTTTTGATACCCACCCTGTATCCAAGGTAATTCAAACACTCAAAGAGGCACAAATCAATGTTGTAGAATCAAAACTTGCTGCTGCAAATGATACTGTTCTCCATACATTTGTAATTAAGTCCCAAGGATCTGAACAACTTACAAAGGAGAAGTTGATTGCTGTTTTTTCCCAACCAGAATCCAACCCATTGCAGCCATTGTCATCAGTTGCATAA 1836 0.4918 MKVDAGLGSVAWDEEDKAMVGAVLGGRALEFLTTNSVSNESVLMAVGSDEGLQNKLSDLVERPNDSNFSWNYAIFWQLSQSKSGDWVLSWGDGCCREPNEEEEGALRGKLTLLRVDEEMQQRMRKVVLQKLHTTFGGSEEDNYAFGLDHVTDTEMFFLASMYFSFPRGYGVPGKCFVSGKHLWLKSVPDFCVRSSLVKSAGIQTIVMVPTDLGVVELGSVRVLPENFELVQAVKSVFSTQCSQYSGVNLSAGGNAVFTGLAIGDGNKVDGGVPIPKLFANAIGNRTHFREKLAVRKMEDNRPWAGHALPNGNNLNNNPNVRNGLHVTGWAVNSGAKQVGPVEIFAPRASMSSVVAELANGVRQDFRLGNSYQSQRQVQMQIDFSGATSRPSHVRPAVGDSELSDVEASCKEEQPSVLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMEDERERFGSTSKDGSVLEDNSRSENQNQEKEAPDVDILAAQDEVTVKVSCPFDTHPVSKVIQTLKEAQINVVESKLAAANDTVLHTFVIKSQGSEQLTKEKLIAVFSQPESNPLQPLSSVA 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01221 611 Pfam Helix-loop-helix DNA-binding domain 438 484 IPR011598 GO:0046983
Phco11g01221 611 Gene3D - 427 499 IPR036638 GO:0046983
Phco11g01221 611 MobiDBLite consensus disorder prediction 404 445 - -
Phco11g01221 611 MobiDBLite consensus disorder prediction 495 522 - -
Phco11g01221 611 FunFam Transcription factor bHLH13 427 501 - -
Phco11g01221 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 437 497 IPR036638 GO:0046983
Phco11g01221 611 SMART finulus 440 489 IPR011598 GO:0046983
Phco11g01221 611 MobiDBLite consensus disorder prediction 385 445 - -
Phco11g01221 611 Coils Coil 480 500 - -
Phco11g01221 611 CDD bHLH_AtAIB_like 431 496 - -
Phco11g01221 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 434 483 IPR011598 GO:0046983
Phco11g01221 611 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 237 IPR025610 -
Phco11g01221 611 PANTHER MYC 39 594 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01221 Phco-Chr11 9172370 9174205 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco11g01221 bHLH-MYC_N 1.4e-52 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01221 11 9172370 9174205 Phco1g00584 1 5077003 5078895 PCT