Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01216 ATGGAACAATTGCAAGCTTCGACTAATCAGGGACTTAACCAGGAGCTGAGCCAGCAAATTCCTCATTTCAATCTCCCGTCCAAGATTCTCTGTCGTGTTGTTCACATTCAGTTGTTGGCGGAACAAGAAACGGATGAAGTTTATGCTCGTATCACTTTGCTTCCGGAGTCAAATCAAGAAGAGCCAACGAGTCCAGACCCAAGTGTACCCGAGACCCAGAAACAGAGTTTTCACTCTTTCAGTAAGATATTAACTGCTTCTGATACTAGTACTCATGGAGGATTTTCAGTTCTGCGGAGGCATGCTACCGAGTGTCTGCCTCAATTGGACATGACCCAAACTATCCCCACTCAGGAATTGGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAACCAAGGAGGCACTTGCTCACAACTGGCTGGAGTACATTTGTCACATCCAAGAGACTTGTTGCTGGAGATGCTTTTGTGTTTCTAAGGGGAGAGAGTGGCGAACTGAGAGTTGGTGTTAGGCGTGTAGCACGACAGCAAAGTCCCATGCCTTCTTCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCCTCTCATGCATTTTTGACCAGTACCATGTTTGTGGTATATTACAAACCTAGGACTAGCCAGTTTATTATTGGACTAAACAAATATCTGGAGTCTGTCAACAAGTTTTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGTGGAGGACTCACCTGAAAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGCATCTCCAGGATGGCGGAACTCTCAGTGGCGTTCATTGAAGGCTCAATGGGATGAACCAGCAATAATTCCAAGGCCAGAGAGGGTTTCTTCGTGGGAGATAGAGCCGTTCGTTGCTTCCACTGCTTTGAATGTCACTCAACAAGTGGTGAAGAGCAAAAGGTCCAGGCCACCTGAGGTTTCGTCTGAAATTGGCCCCAATTCCCCTGCCGCGGCTTTGTGGTATCATGGACCATCCTTATCCCATGACCCTACTGCATTGGGTGGCACTTCAGAGGTCCAAAGCAATGAAAGCCCAGTTATATGGTCTACAAGGATGAAAGAAATTAATGTGAATCCTATGAATGGTAACAGGAGCAGCTCCAGCAGAGTCCGTGTGGAAGGAATGTGGCCTTCTTCCCCACATTTGAGTGTCTCTTCCAACCTTTTTCCGGACCCCAAAAACAGCAAAGCTGTCACAGCACAATCAAATGTCTCTGGGTATGCCCCTGTTTCATCTAGGCCGAATGATGATTTGGCACATGATCCCGTGGAATGTGGTAAAAGAAGTGAGAATCTCATGGACTGTTGGGTATTTGGAGTTAATTTGACTAACAATTTTACTAATGTTGCCCTCCCGGATAAAGAACTGGGATGTCCAGCTATAATAATTCCTAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAACTCAGGCTGGTCAGAATCACAATTATTCACTGTCCAATAAGGTGCAGAAGCAAATTATTTCTGATGGATCACCCAGTGAGAGACACGCCAAGCAGGCCACAGTACCATCCACCAGGACTCGGACCAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCAGTTGACCTCACTGTCATAAAAGATTATGAGGCTCTCATAGACGAGCTTGAGAAAATTTTTGATATTAAGGGGGAGCTTCGAATGCAAACCAAATGGGCTATTACTTTCACTGATGATGAAAATGACATGATGCTCGCTGGTGATGATCCATGGCCTGAGTTCTGTTGTATGGCGAAGAGGATTTTCATTTGTTCAAGGGAAGATGTGAAGAAGTTGAAAAGCAAGCATTCGGCCTGTTCATCAGAGGGCGAGGAGACTTTGTTGAGCCAAGATTCACAGAATAGGGAAGAAACTCAGCAAGTCTCTTGCGATTTGACAGCTTAA 1989 0.456 MEQLQASTNQGLNQELSQQIPHFNLPSKILCRVVHIQLLAEQETDEVYARITLLPESNQEEPTSPDPSVPETQKQSFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQTIPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGESGELRVGVRRVARQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPRTSQFIIGLNKYLESVNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDASPGWRNSQWRSLKAQWDEPAIIPRPERVSSWEIEPFVASTALNVTQQVVKSKRSRPPEVSSEIGPNSPAAALWYHGPSLSHDPTALGGTSEVQSNESPVIWSTRMKEINVNPMNGNRSSSSRVRVEGMWPSSPHLSVSSNLFPDPKNSKAVTAQSNVSGYAPVSSRPNDDLAHDPVECGKRSENLMDCWVFGVNLTNNFTNVALPDKELGCPAIIIPSGPKDSIPVAACETQAGQNHNYSLSNKVQKQIISDGSPSERHAKQATVPSTRTRTKVQMQGVAVGRAVDLTVIKDYEALIDELEKIFDIKGELRMQTKWAITFTDDENDMMLAGDDPWPEFCCMAKRIFICSREDVKKLKSKHSACSSEGEETLLSQDSQNREETQQVSCDLTA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01216 662 MobiDBLite consensus disorder prediction 56 74 - -
Phco11g01216 662 MobiDBLite consensus disorder prediction 636 662 - -
Phco11g01216 662 Gene3D - 536 628 - -
Phco11g01216 662 Gene3D - 77 181 IPR015300 -
Phco11g01216 662 ProSiteProfiles B3 DNA-binding domain profile. 80 182 IPR003340 GO:0003677
Phco11g01216 662 MobiDBLite consensus disorder prediction 417 439 - -
Phco11g01216 662 CDD B3_DNA 78 180 IPR003340 GO:0003677
Phco11g01216 662 Pfam B3 DNA binding domain 80 180 IPR003340 GO:0003677
Phco11g01216 662 SMART B3_2 80 182 IPR003340 GO:0003677
Phco11g01216 662 MobiDBLite consensus disorder prediction 417 434 - -
Phco11g01216 662 SUPERFAMILY DNA-binding pseudobarrel domain 68 209 IPR015300 -
Phco11g01216 662 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 628 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco11g01216 662 MobiDBLite consensus disorder prediction 55 74 - -
Phco11g01216 662 MobiDBLite consensus disorder prediction 635 662 - -
Phco11g01216 662 FunFam Auxin response factor 78 182 - -
Phco11g01216 662 Pfam Auxin response factor 206 284 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco11g01216 662 Pfam AUX/IAA family 528 576 IPR033389 -
Phco11g01216 662 FunFam Auxin response factor 240 311 - -
Phco11g01216 662 SUPERFAMILY CAD & PB1 domains 536 616 - -
Phco11g01216 662 Gene3D - 240 312 - -
Phco11g01216 662 ProSiteProfiles PB1 domain profile. 540 621 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01216 Phco-Chr11 9111565 9115242 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco11g01216 B3 2.8e-20 CL0405