Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01214 ATGGGTTTCCGTGCTGATGAGGCAAAGTCGAGTACGCAACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGTACTTGCTCCATATTTCCCAACCAATGAGGTTGAGAATTTTGCTGTAGTGCATAGAGTGTTCGGTGCTAGCAACGTTGTCAGAATGATTCAGATGGTAGAGGAAACAAAGAGAGAGGATGCAGTTAAATCCATGGTGTATGAGGCCACAGCACGGCTTAGAGATCCAGTTTATGGGAGTGCTGGAGCTATTTACGAGCTACAAAAGATGATAGAGGAAGTGAAGGCACAGCTGGATTCGATAAAAACACGGGTGTCAGAGATGCAAGAACAAAAGGAGCAGTTGTTGAGTATTAGTGGCAATTACAATCCTTTATTTAGCGTCAATGACCCTATGTTTGATTCTCCTATGGCCTCAGATCCATTTGAATTTCCTTTGGAAGGTGGTTGGGTATACAGCAATATCTCAGCACCCTCCTGCTAG 516 0.4516 MGFRADEAKSSTQHQPCAACRMLRRRCDSKCVLAPYFPTNEVENFAVVHRVFGASNVVRMIQMVEETKREDAVKSMVYEATARLRDPVYGSAGAIYELQKMIEEVKAQLDSIKTRVSEMQEQKEQLLSISGNYNPLFSVNDPMFDSPMASDPFEFPLEGGWVYSNISAPSC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01214 171 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Phco11g01214 171 Coils Coil 95 129 - -
Phco11g01214 171 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Phco11g01214 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01214 Phco-Chr11 9087164 9088054 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco11g01214 LOB 1.6e-38 No_clan