Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01213 ATGGGAAGAGCTCCTTGTTGCTCCAAAGTAGGGTTGCACAGAGGTCCATGGACTCCACGAGAAGATGCATTGCTCACTCAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCACTGCCAAAAAGAGCTGGTCTTCTTAGATGTGGAAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAAGTCCAGAAGAAGATGATCTCATAATTAGAATGCATTCACTTTTAGGAAATCGATGGTCCCTCATTGCAGGAAGATTACCAGGACGAACAGATAATGAGATAAAGAATTACTGGAATACCCATCTTAGTAAGAAGCTGAGAAATCAAGGAACAGATCCTAAGACACACCACAAGTTAACTGTACCGCCAGAGAAGAAGAAGGGCAAAAAGAAGAACAAGCAAAAGAATGAGAATAAGAAAGGGAGCTCAGAGAAAACCTTAGTTTATCTACCAAAAGCCGTAAGGGTTAAGGCTTTGTCATGTGTGCCTCGAACGGAGAGCACCTTCACCCTGGATTCGAATTCAGGTAGTGCATCAACGAGCCAGGAGAAAGTTCAGAGCCCCGAAGAAGAAGCAAGAGAGGTAAACATGGTTTGGGGGGTAGGCAGCGATGGAGACAATGGCGAGATTGGAATATTCTTTGGTGAAGAGCATGACCTGGTCTACAGCTCCTCTTACGTGGAATGTCATTCTGATAATGTTCACACTGATCATGGTACGCTTGAAAAGCTCTATGAAGAATATCTGCAGCTCTTGAAGGATGAAGAGAAACCTGCAGATGAATTAGATTCTTTTGCTCAATCTTTATTGGTGTAG 846 0.4314 MGRAPCCSKVGLHRGPWTPREDALLTQYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNISPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPKTHHKLTVPPEKKKGKKKNKQKNENKKGSSEKTLVYLPKAVRVKALSCVPRTESTFTLDSNSGSASTSQEKVQSPEEEAREVNMVWGVGSDGDNGEIGIFFGEEHDLVYSSSYVECHSDNVHTDHGTLEKLYEEYLQLLKDEEKPADELDSFAQSLLV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01213 281 Gene3D - 71 156 - -
Phco11g01213 281 Gene3D - 14 66 - -
Phco11g01213 281 FunFam Transcription repressor MYB5 71 156 - -
Phco11g01213 281 MobiDBLite consensus disorder prediction 179 201 - -
Phco11g01213 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco11g01213 281 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco11g01213 281 CDD SANT 16 61 IPR001005 -
Phco11g01213 281 SMART sant 13 63 IPR001005 -
Phco11g01213 281 SMART sant 66 114 IPR001005 -
Phco11g01213 281 MobiDBLite consensus disorder prediction 130 146 - -
Phco11g01213 281 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 196 - -
Phco11g01213 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco11g01213 281 CDD SANT 71 112 IPR001005 -
Phco11g01213 281 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco11g01213 281 MobiDBLite consensus disorder prediction 115 156 - -
Phco11g01213 281 MobiDBLite consensus disorder prediction 179 195 - -
Phco11g01213 281 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco11g01213 281 FunFam Myb transcription factor 11 67 - -
Phco11g01213 281 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco11g01213 281 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01213 Phco-Chr11 9077325 9078773 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco11g01213 Myb_DNA-binding 1.5e-13 CL0123