Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01200 ATGTCAGATCTTATGGAATATTCTCATTCATCGAATGCAGGCACGAAGAAGAAGAGGAGCAAAAACAAAAAAAGGTTCAGCGATGGACAAGTGAAATCATTGGAATCCATGTTTGAGACAGACTCGAGACTGGAACCAGCAAAGAAATTGGAGGTGGCAAGAGAGCTTGGCTTGCAACCAAGACAAGTTGCCATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTTAAAGCAGATTCAGCTAGACTACACCATACTTCGAGCCAATTATAAGACTTTGGATTCACAGTTTCATGCTCTCAACAAAGACTATCAGTCAATGTTAATACAGTTGCAGAATATGAAAAATGGATTAAAAAAGCCCCTAGAACAAACTGAGAGTTGTAGCACAGGATACAAAGCAGCAAACAGCATGGACAGTGAAGCGGGAAATGGAGAGGCCATCAAAAGAGAACAGGCGATAAAGCAGCCAAGCTCGACATCAGGAAGATCAGAAGACATTGTTTGTGGTGGTATCTCGGAATGTGACAGCAGCATAAAGGCAAAACAATACTTTGGTGTGGAAGATGAACCTTCCCTTCTGAACTTTGTTGAGAACACTGATGGTTCTTTGACAACATCAGAACATTGGGGTTTGTTAGAATCAGAGGATATATTAGGCCAATTAAGCAGCTGTGATTATCAATGGTGGGACTTCTGGTCCTGA 705 0.417 MSDLMEYSHSSNAGTKKKRSKNKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQIQLDYTILRANYKTLDSQFHALNKDYQSMLIQLQNMKNGLKKPLEQTESCSTGYKAANSMDSEAGNGEAIKREQAIKQPSSTSGRSEDIVCGGISECDSSIKAKQYFGVEDEPSLLNFVENTDGSLTTSEHWGLLESEDILGQLSSCDYQWWDFWS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01200 234 FunFam Homeobox-leucine zipper protein ATHB-7 5 77 - -
Phco11g01200 234 SMART HOX_1 19 81 IPR001356 GO:0003677
Phco11g01200 234 CDD homeodomain 26 78 IPR001356 GO:0003677
Phco11g01200 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 158 IPR045224 GO:0003700
Phco11g01200 234 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Phco11g01200 234 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Phco11g01200 234 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Phco11g01200 234 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Phco11g01200 234 SUPERFAMILY Homeodomain-like 6 78 IPR009057 -
Phco11g01200 234 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Phco11g01200 234 MobiDBLite consensus disorder prediction 1 39 - -
Phco11g01200 234 Pfam Homeobox associated leucine zipper 77 117 IPR003106 GO:0006355|GO:0043565
Phco11g01200 234 Gene3D - 12 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01200 Phco-Chr11 8988390 8989381 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco11g01200 Homeodomain 7.5e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01200 11 8988390 8989381 Phco1g00559 1 4708731 4709684 PCT