Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01159 ATGCTTGGTTCACACGCTAAGCCGGTTACCAGTCAAATATCCGCGTCAAGCAGCAGTGGGGCCATACGGCGGTCCTCTTTTGTGGTAAATGCCATCAACATCTTGCTGCCATTCTTCGTACGCATCGTAACTGACAGCAATCCACGAAAATCAATGGCGGAGGAGAAAAGAGAGGAAGAACCGCACCCGAACAGCGAACCATCCACCACCATGGCATTCTCCGACGAGATTCCCAACAACTTCACTTTCCCTTTCCAACCACCCACCATCTTCGACGTCATGCCGCCGCCGTCCTTGTATTCTTCCTGCGACCACAAGGCCTCGCCCTTCGGCTTCTTGGAACTGCTCGGTGTCCACGACTACAACGCGCCGCTGTTCGATTGGCTCCCCGCGGCTGCGCCGTCGCGGGCGAGCTCCAAAGTGCCGGACTCCTCCGAGGTGCTGAACACTCCCGCGTCGCCCAACTTGTCGTCGATTTCGTCGTCTTCTAATGAGGCCACCACCACCACCACCACCGCGGAGCAGAGTGGTAAAGGTGGGCTTGAACACGAGGAAGGTGAAGCAGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGAGATGACCAGGATCAAGACAAGACTAAGAAACAGTTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCGCCGGTTGCGGCGTAAAGAAGCGAGTGGAGCGTTCCTCCGATGACCCTTCCATCGTGGTTACCACCTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCTCGGGCTGGCTTCGGGTTCGTGAACGAGCCTGGTGGATTGGGACATGCCGGTACCTTCGGTTCCTCACAATTCGTGCTGCCACATCAGCACCAACACCAGCCACAAGCTTCGGCTTTGATATATAACTCCAACCCACTTTTTGCTAACTCCGGTAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTGGTCAGGACCACGCGAACCGTCGAGGTTTCGGACACGAGGCTTTGTCGAGAGACAATGGGTTGCTTCAGGACATTATTGTGCCATCGCAGGTGAGGAAGGAGGAGAAGGATTGA 1203 0.5453 MLGSHAKPVTSQISASSSSGAIRRSSFVVNAINILLPFFVRIVTDSNPRKSMAEEKREEEPHPNSEPSTTMAFSDEIPNNFTFPFQPPTIFDVMPPPSLYSSCDHKASPFGFLELLGVHDYNAPLFDWLPAAAPSRASSKVPDSSEVLNTPASPNLSSISSSSNEATTTTTTAEQSGKGGLEHEEGEAEEEEEGGNGGRDDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSRAGFGFVNEPGGLGHAGTFGSSQFVLPHQHQHQPQASALIYNSNPLFANSGSNFMNTTSFGGFGQDHANRRGFGHEALSRDNGLLQDIIVPSQVRKEEKD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01159 400 MobiDBLite consensus disorder prediction 135 227 - -
Phco11g01159 400 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 150 330 IPR044810 GO:0003700
Phco11g01159 400 MobiDBLite consensus disorder prediction 50 77 - -
Phco11g01159 400 Gene3D WRKY domain 221 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01159 400 SUPERFAMILY WRKY DNA-binding domain 229 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01159 400 SMART WRKY_cls 237 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01159 400 MobiDBLite consensus disorder prediction 50 64 - -
Phco11g01159 400 MobiDBLite consensus disorder prediction 138 177 - -
Phco11g01159 400 ProSiteProfiles WRKY domain profile. 232 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01159 400 FunFam WRKY transcription factor 57 223 297 - -
Phco11g01159 400 Pfam WRKY DNA -binding domain 238 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01159 Phco-Chr11 8658001 8661049 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco11g01159 WRKY 4.6e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01159 11 8658001 8661049 Phco11g01159 11 8658001 8661049 ECH
Phco11g01159 11 8658001 8661049 Phco8g02119 8 22634358 22636127 PCT