Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01135 ATGGAAGTGAAAGGAAGGGTAAGCAACTCAACAGGCACCATAGTCCAAAGTGAAGATGAGATGGATCTTCGAAGAGGTCCTTGGACCGTCGATGAAGACCTTGCTCTCATAAATTACATTGCCAATCATGGAGAAGGTCGATGGAATTCCCTTGCACGTTCAGCTGGACTCAAACGAACTGGCAAGAGTTGCAGATTGAGATGGTTGAACTATCTTCGTCCTGATGTTCGTCGTGGCAACATCACTCTTGAAGAACAGCTTCTCATTCTCGAGCTCCATGGTCGCTGGGGAAACCGGTGGTCTAAAATTGCTCAATATTTGCCTGGAAGAACTGATAACGAGATCAAGAATTATTGGAGAACTCGTGTTCAAAAGCACGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTTTGGATGCCTAGGCTGGTGGAACGCATTCAAGCCGCCGCCGCCACCGCCGCCGCCACCGCCGGTTCTCCCACGGCTTCTGCCAGTGCTACTACAACCATCACCAACAACAATAATACAACGTACAACTACAACCTTAACAGCAGTTTTGAGGTGCATAGTGGGAACATGATGTTGAGTCCAGCAATTATGAACAACAACTTCGGTGGTTCACAAAGTTACACTCCAGAAAACAGTAGCACGGGTGCATCGTCTGACTCGTTTGGGACTCAGGTTTCACCTGTATCGGAGTTGACTCAGGATTACTACAATAATGTTACGGTTGTTAACAGTAACAGTAACAACAGCAATAACCCTAATCTCGATTACTACCCACAAGTACAAGATCAACTCAGTTTTTTGGATTGCATCACAAGCCCATCAGGGTTGTTCTCTCAGCAGCTGGATTTCCAATCCATGGAACCAAACACCCCGTGGATTCAGAGTAATGGGGAAACATACAACGGTTTCTGGAACGTTGATAACATATTATTGTTCCAACAACTCACTGACAACATGTGA 996 0.4588 MEVKGRVSNSTGTIVQSEDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAATAAATAGSPTASASATTTITNNNNTTYNYNLNSSFEVHSGNMMLSPAIMNNNFGGSQSYTPENSSTGASSDSFGTQVSPVSELTQDYYNNVTVVNSNSNNSNNPNLDYYPQVQDQLSFLDCITSPSGLFSQQLDFQSMEPNTPWIQSNGETYNGFWNVDNILLFQQLTDNM 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01135 331 CDD SANT 93 121 IPR001005 -
Phco11g01135 331 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Phco11g01135 331 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 209 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco11g01135 331 Gene3D - 22 78 - -
Phco11g01135 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Phco11g01135 331 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Phco11g01135 331 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Phco11g01135 331 CDD SANT 27 72 IPR001005 -
Phco11g01135 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Phco11g01135 331 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Phco11g01135 331 SMART sant 24 74 IPR001005 -
Phco11g01135 331 SMART sant 77 125 IPR001005 -
Phco11g01135 331 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Phco11g01135 331 Gene3D - 82 145 - -
Phco11g01135 331 Coils Coil 324 331 - -
Phco11g01135 331 MobiDBLite consensus disorder prediction 215 236 - -
Phco11g01135 331 FunFam MYB transcription factor 82 145 - -
Phco11g01135 331 FunFam Myb transcription factor 25 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01135 Phco-Chr11 8491258 8493080 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco11g01135 Myb_DNA-binding 4.6e-15 CL0123