Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01123 ATGGGTGCACCAAATGCTTTCAGATGTGGAAGAAGAGGAAGAACAATGGCTGGTAAAAGTTCAATTACTCAGCCAGCAGCCAGACATGGCACCAACAAACTGACCAGAAATGACTTAGCTGATCTAGAATGGACCAATAGGATTCCAGAGTGTCCAACTTACTACCCATCAGAGCATGAGTTTGACCATCCTTTAGTTTATCTGCAGAAAATAGCTCCTGAAGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCAAATCCATCTGCTTTTGTCTTAATGAAAGAGAAAAGGGATTTCAAGTTTGAAACAAACTTACAGCCTCTCCGTCTTTCTAAATGGAATGAGAAGGATACAATAACCTTTTCTATGAGTGGCAGAAAATATACATACGATGAATTTGAGGCTCTTGCAAACAAGACTTTTTTCAGTAGATTTCATTGTTCTGGAGGTCTTCCTTCTTCATGTATGGAAAAGGAGTTCTGGCACGAGATGATGCATGGAAAGAAGGGAAAAGTTGAGTATGGAATCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAGGCTTGGGACAAGTAAATGGAATTTGAAGAATTTCTCGCGGCTACTGCTATCGCCGTTACGTTTAGTTGACATGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATAATCACTCAGGTGCAAGTAAAACTTGGTACGGCGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGATTGTCTTACAACATGTGTATTGCAATAAGATCTTAACAAAACATGGAGAGGATGGAGCTTTCAGATTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTCATGCTACAACATGATGTGGAAGTTTACAAGGCTGTACAGAATCCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTAATGATGAGTGGTTTCCTCTTGGAGCTTCAGCTAGCCGGCGTTATGCACTTCTTAGAATGATGCCTGTAATTCCATATGAGGAACTTCTTTGTAAAGAAGCAATGTTTGTTTACAAGTCCTCAAGGGTCAGAAGTTCCAAGAACAAGCCTGAAGACAAAGCATCTTATAATGCTATAGTGCAGCCTTTCTTACATCTTATGCAATTTTATATGACATCCCTTTCGCGACAGAAGAGTTCAAGAAACTGGCAAAGGTCTTCCAATGCATCAGGTTTGGTGACATGCCGCATATGCCACAGGGATTGTTATGTAGCTTACCTGCTGTGCAAGTACTGCTTTTCTCATCCGATTTGTCTTTTCCATGACATTGCACCACATACTTGTATATGTGGAAGATTTTATTCTATTTTCAAAAGGAATGACATTTTCGAACTCGAAGAAGCCTTCAAAAGTTTTCAACAGGAGAAAAAGTGCAACGAGACATTCTCTCTATCAAGTATTTTCTCCTGTAACAGAAATGAATGCATCAAACATCTCGAGGATCATCCTTGCCACCAAGAAAACAGTGTAAGGGGAACTGCTAATTCTCCAGGGGCAGCATCTAAACCGAAAACAAAAATAGCTGACTGCATTAAGCACAGTGTTGAAAATAAGACAAGAATGCTGCATTGGAGAAACTATGGGCTTCCATCTGTGAAGGGTACCAATAGGCCAGAAAGGCCAGAAATCATTTATAACCTGAGAAAACGTAAATCAAAATGA 1818 0.396 MGAPNAFRCGRRGRTMAGKSSITQPAARHGTNKLTRNDLADLEWTNRIPECPTYYPSEHEFDHPLVYLQKIAPEASKYGICKIVSPIAASNPSAFVLMKEKRDFKFETNLQPLRLSKWNEKDTITFSMSGRKYTYDEFEALANKTFFSRFHCSGGLPSSCMEKEFWHEMMHGKKGKVEYGINVEGSAFSCDPDDRLGTSKWNLKNFSRLLLSPLRLVDMEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYNHSGASKTWYGVPGYAASQFEKIVLQHVYCNKILTKHGEDGAFRFLAQKTTMFPPNVMLQHDVEVYKAVQNPGEFIITFPRAYHAGFSHGFNCGEAVNFANDEWFPLGASASRRYALLRMMPVIPYEELLCKEAMFVYKSSRVRSSKNKPEDKASYNAIVQPFLHLMQFYMTSLSRQKSSRNWQRSSNASGLVTCRICHRDCYVAYLLCKYCFSHPICLFHDIAPHTCICGRFYSIFKRNDIFELEEAFKSFQQEKKCNETFSLSSIFSCNRNECIKHLEDHPCHQENSVRGTANSPGAASKPKTKIADCIKHSVENKTRMLHWRNYGLPSVKGTNRPERPEIIYNLRKRKSK 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01123 605 SMART cupin_9 195 368 IPR003347 -
Phco11g01123 605 ProSiteProfiles JmjN domain profile. 51 92 IPR003349 -
Phco11g01123 605 Pfam jmjN domain 52 84 IPR003349 -
Phco11g01123 605 Gene3D Cupin 51 414 - -
Phco11g01123 605 PANTHER LYSINE-SPECIFIC DEMETHYLASE 43 519 - -
Phco11g01123 605 SUPERFAMILY Clavaminate synthase-like 197 385 - -
Phco11g01123 605 ProSiteProfiles JmjC domain profile. 195 368 IPR003347 -
Phco11g01123 605 FunFam Lysine-specific demethylase isoform A 46 395 - -
Phco11g01123 605 SMART JmjN_1 50 91 IPR003349 -
Phco11g01123 605 Pfam JmjC domain, hydroxylase 228 351 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01123 Phco-Chr11 8350009 8353645 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco11g01123 JmjC 1.5e-38 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01123 11 8350009 8353645 Phco11g01123 11 8350009 8353645 ECH