Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01105 ATGTGCAGCTGCATCTTTGGGCCAATAATCATGGACAATTACCAAGGTGATTTAACTGACATAGTCCGAGCCAGTGGTGGAGCATATGGTGGTGGCAGCAGCAGCAGCTGCAGCACAGGCACTTCATCTGCTGAATTACCTACCACATCTCATCACCATACTATTATTACTCACACCCTCTCTCGTAATGATCACTGGCACCAACACTTCTCTTCTTCTTCTTCTGACCCCATCACCTTCTCTTCTGTGCTTCAAGACCCCAGAGGACTCACCAACTTTGGTGACCCCTTCTCCACCATGAGAGATCCCTTCCTTCAGGAGCTTGGCATGCCCTCCGCTTCTGCCTACTTCACTGGGGGCTTGGAAGAAGCAGCTGCTAGTTTTGGTGCTGCTGCTGTTAATACTAATGCTAATACTAGTACCACTGTTTTTGCTGCACACAAGATTCTTGAGGAACATGACATGAGAAGACCTTGTAAAAACATATTCTCCAACATGATTCAGATCTCTCCCAATGCAAAGTTACCGGTCTCACCCTATGATTCCACCTCAGCCATGGCACCTTCTCCAAGGGCAATTAAACCTCCTGCTGTTGTTTCACCCAACATGGTTAATGCAAACTCCTCCAAGGATTGCCTTGTGGACACCACAGGAGTGCAGATCTCATCTCCACGGAATCCGGGCCTTAAACGAAGGAAGAACCAGGCCAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAGACCGGAGAGGTTGTTCCATCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAGCCCATTAAAGGTTCACCTTATCCCAGGGGTTACTACAGATGCAGCAGCTCAAAGGGTTGCTCTGCGAGGAAGCAAGTTGAGCGGAGCAGAACAGACCCAAACATGTTGGTTATTACATACACATCGGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTGGCTGGTTCAACAAGGTCACAGCCATCCAAGAACAATGCTGGAAATTCAAAGAGCTCAGAAGGCTCAAACCCCCAAAAGAGCACAACACCAAAAGCAAAGGATGATCAGCAGCAGGAGAGTAACACCAGTGAGGGCAATGTGTCGCCAGTTGTTGCTGGGAATTCATCAGCAAACAGTGCATCTGTGAAGGAAGAGAATATGGAAGACATAGAGAAGCAGTTTGAGATGGATGAGGGAGAGTTCAGTGATGGACTCCCTTACAAGCCTTGTTTGATGGATCAGAGTAATAATCAATCTGAGGATTTCTTCGCTGAGTTGGGAGAAATAGAAGCTGACCCACTGGATCTTTTGTTTACCCAAGGTTTTGGTGCAGCTGGTGATCAAAGGGAGGAATCCAAGGCCTTAGATCCATTCCATCTGTTTGACTGGTCAGGAGACAACAACACCAACACAAACACCAGTTCATTTGAAGAACCTAATACAAAGAGAAGGTTATAA 1473 0.4698 MCSCIFGPIIMDNYQGDLTDIVRASGGAYGGGSSSSCSTGTSSAELPTTSHHHTIITHTLSRNDHWHQHFSSSSSDPITFSSVLQDPRGLTNFGDPFSTMRDPFLQELGMPSASAYFTGGLEEAAASFGAAAVNTNANTSTTVFAAHKILEEHDMRRPCKNIFSNMIQISPNAKLPVSPYDSTSAMAPSPRAIKPPAVVSPNMVNANSSKDCLVDTTGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNAGNSKSSEGSNPQKSTTPKAKDDQQQESNTSEGNVSPVVAGNSSANSASVKEENMEDIEKQFEMDEGEFSDGLPYKPCLMDQSNNQSEDFFAELGEIEADPLDLLFTQGFGAAGDQREESKALDPFHLFDWSGDNNTNTNTSSFEEPNTKRRL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01105 490 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01105 490 MobiDBLite consensus disorder prediction 466 490 - -
Phco11g01105 490 MobiDBLite consensus disorder prediction 302 388 - -
Phco11g01105 490 Pfam WRKY DNA -binding domain 260 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01105 490 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01105 490 Gene3D WRKY domain 232 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01105 490 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 16 442 IPR044810 GO:0003700
Phco11g01105 490 MobiDBLite consensus disorder prediction 275 392 - -
Phco11g01105 490 MobiDBLite consensus disorder prediction 468 483 - -
Phco11g01105 490 FunFam probable WRKY transcription factor 14 232 312 - -
Phco11g01105 490 SUPERFAMILY WRKY DNA-binding domain 256 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01105 Phco-Chr11 8254372 8257173 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco11g01105 WRKY 2.8e-25 CL0274