Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco11g01098 | ATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAAGCAGCACTCAAAGCTGGAGTTATCAAGCATGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAATAGTGTCTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGCGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAGTCTAGGTTAGCAGTCAGAAGGGTGCACCATACCCCCAAACAGGATGAGCACTCTATGTCTATCACTCCTGTTGCTCCAAGTGATGAAGACATTGTTGATGTTAAGCCTCTTCAAATTTCTAGAGATACGTTGCAGATTCTGGGTCCAAAAAGGTCTAATTTAAGTTTGGATAAACTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCGGCTTTCATAGAGGACCAATATTGGGCACTGCCAGACTTAAAAAGGATGTTGTCTGCAAAATTAAAATTTTTGACAGCAAGTGGAAAACTGATCAAGGTAAATCGCAAATATAGGATTGCACCTACAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGTTATTTTTGGATGGGAGGCAGAAAGGCTCTATGAAAATGGACAAGGATGAGACCAACATCCTTACTAAATCTCAGATAGATTTAGAGTTAGCAAAGATAAGGTCCATGACTCCGCAAGAGGCAGCTGCATTTGCTGCTCGAGCAGTTGCTGAAGCAGAAGCTGCCATAGCAGAAGCAGAGGAGGCAGCCAAGGAGGCTGAGGCAGCAGAAGCCGATGCAGAGGCAGCGCAAGCTTTTGCAGATGCTACAACGAAATCAGGGAAAGGAAGGAAATCCCCAAGGAGGATCCATGCTTGA | 900 | 0.4433 | MGAPKQKWTAEEEAALKAGVIKHGVGKWRTILKDPEFNSVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHHTPKQDEHSMSITPVAPSDEDIVDVKPLQISRDTLQILGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWALPDLKRMLSAKLKFLTASGKLIKVNRKYRIAPTAAYSDRRRNSSMLFLDGRQKGSMKMDKDETNILTKSQIDLELAKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSGKGRKSPRRIHA | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco11g01098 | 299 | FunFam | Telomere repeat-binding factor 1 | 118 | 198 | - | - | |
| Phco11g01098 | 299 | SUPERFAMILY | "Winged helix" DNA-binding domain | 118 | 197 | IPR036390 | - | |
| Phco11g01098 | 299 | FunFam | Telomere repeat-binding factor 1 | 2 | 58 | - | - | |
| Phco11g01098 | 299 | SMART | h15plus2 | 118 | 183 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Phco11g01098 | 299 | ProSiteProfiles | Myb-like domain profile. | 5 | 57 | IPR001005 | - | |
| Phco11g01098 | 299 | Gene3D | - | 117 | 197 | IPR036388 | - | |
| Phco11g01098 | 299 | FunFam | Telomere repeat-binding factor 1 | 8 | 86 | - | - | |
| Phco11g01098 | 299 | SMART | sant | 4 | 59 | IPR001005 | - | |
| Phco11g01098 | 299 | Coils | Coil | 243 | 280 | - | - | |
| Phco11g01098 | 299 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 33 | IPR017930 | - | |
| Phco11g01098 | 299 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 291 | IPR044597 | GO:0003691 | |
| Phco11g01098 | 299 | MobiDBLite | consensus disorder prediction | 262 | 299 | - | - | |
| Phco11g01098 | 299 | SUPERFAMILY | Homeodomain-like | 2 | 71 | IPR009057 | - | |
| Phco11g01098 | 299 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 120 | 188 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Phco11g01098 | 299 | Gene3D | - | 8 | 87 | - | - | |
| Phco11g01098 | 299 | Pfam | Myb-like DNA-binding domain | 5 | 56 | IPR001005 | - | |
| Phco11g01098 | 299 | Pfam | linker histone H1 and H5 family | 123 | 181 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Phco11g01098 | 299 | CDD | SANT_TRF | 6 | 56 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco11g01098 | Phco-Chr11 | 8199147 | 8203004 | Transposed |
Transcription factors information