Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01072 ATGGCTTCTTCAATGGCAAGTGCTGGTGGGTCTGGTGATGATGATGGTTCTCAAAACTTGAACAATGGAAGGAAAAACTCCTACAAACGTCTTACTTCTTCTCAAACAGCAAGACTTGAAAGATTCATCAAGGATTGCCCACACCCTGATGAGGCCCAACGACGTCAGTTGGCTGCTGAGATTGGACTTGAGCCAAGGCAAATAAAGTTCTGGTTTCAGAATAAGAGGACCCAAATCAAGAATCAACACGAGAGAGCAGATAACACTGCTCTTCGTGTTGAGAATGATAGGATACACACAGAAAATGTTACAATGCAAGAGGCTTTGAAAAGTATGCTTTGCCCATCTTGTGGGGGACCACCGTGTCTTGAAGGAGATCGTGAACATGCTATCCATAATATGAAACTTGAAAATATTCACCTAAAGGAAGAGCATGAGAAGGTGTCTCGTCTTCTTTCGAGGTACTTGGAGAGCCAGATGTTACCACCTGAGCAGTTCCAACAGGGTTTTTTCCCCATCATAGGATCAAGTTCAAATGCATCACATGGAAATCCACTGAACCATGTAATTGGTGCAAGTTCAAGTCATGATCCAAATCTTGCTTTGCAAATGATGGATGGTGGCTATAACTTATTTGCAAGTGAAGGCATAGAAAAAAACCTTATGGCTAAGGTTGCTGCGACCGCAATGGATGAGTTAATTAGGCTTCTTCGGATTAATGAGCCTTTTTGGATCAAGTCTTCCACTCAAGATGGGAAGCTCTATCTTCTGCTTGAAAACTATCAAAAAATGTTCCCAAAGACCAAACATTTCAAAGGGCCAAACGTGCGTATTGAAGCAACAAAAGAATCAGGAATAGTGAGCATTAATAGCCTTCAGCTTGTTGACATGTTTCTAGATTCGGACAAATGGGTTAATCTGTTCCCAACAGTTGTCTCAAAAGCAGAAACAGTGAAAGTACTTGAAAGAGGTTTGGCAGGAAACCGAAGTGGAGCCTTGCAGTTGATGTTCGAGCAAATGCATGTTCTTTCACCCTTTGTGCAACCTCGTGAATTTCAATTCCTTCGTTTCTGTCAACAAATTGAAGAAGGCCTGGTGATTGCAGATGTGTCATTTGATTCCTTTCAGCAAAAATCCTCTATTTTTCACTCTTGGAAATATCCCTCTGGATGCTTGATCCAGGAACTGCCTAATGGGTACTCCATGGTTACTTGGGTTGAGCATGTTGAAGTGGATGATAAAATCCAAGCACATCCACTGTATAAAGATATTATTGCTAAGGGCATTGCATATGGAGCTGAAAGGTGGATTATGGAACTTCAAAGAATTTCCGAGAGATTTGCTGCCTTTTATGTTGAAAAGATACCTGATCATGACACTTCAGGAGTGATCAATTCTCTTGAAGGAAGGCGAAGTATAATGAATTTTGCTCATCGTATGCTCAAAATCTTCTGTGACAGTATAACCATGGCAGATGGTTTGGACTTTCCACTTTCTGATCTGGCGAATACTAGTGGAGTGAGGGTCTCTATTCGCGAAAGCAAAACCATTGGACAACCAAATGGCATGATTGTTGCAGCTGCTACCTCCATTTGGCTTCCTCTCCATTATATGAAAATTTTTGATTTTTTCACAGATGATAAAAACCGGGCTCAGTGGGATGTTCTTACCTGTGGAAACCAGGCACACAAGGTTGCACACATTTCAAATGGAATTCACCCTGGGAACTGTGTTTCGATTATTCGGCCATTCATCCCTAGCGAGAACAATGCACTCATTCTTCAAGAGAGTTTCACAACCCCCATGGGAACGTATGTTATATATGCTCCAACTGATGTAGCAACTATGACTTCGGCCATAATGGGAGAAGACTCTTCAATGTTACCAGTTCTTCCATCAGGTTTTGTCATCTCTCCAGATGGTGATCCGAATGCAGCTTTGGGAGCATTTGATTGTTCAGATGGTGAAAGATTGGGAGGCTCATTGCTGACTGTGGGATTCCAGATACTAGCTAGTGCTGATGGACGCAACATGCCAAATAGGAAAGCTGGAGCAGCTGTGAACTCCCTTTTAACCTCAACTATTCTGAGAGTCAAGGATGCTCTGAATTGCAACAACATGGACTGA 2127 0.4217 MASSMASAGGSGDDDGSQNLNNGRKNSYKRLTSSQTARLERFIKDCPHPDEAQRRQLAAEIGLEPRQIKFWFQNKRTQIKNQHERADNTALRVENDRIHTENVTMQEALKSMLCPSCGGPPCLEGDREHAIHNMKLENIHLKEEHEKVSRLLSRYLESQMLPPEQFQQGFFPIIGSSSNASHGNPLNHVIGASSSHDPNLALQMMDGGYNLFASEGIEKNLMAKVAATAMDELIRLLRINEPFWIKSSTQDGKLYLLLENYQKMFPKTKHFKGPNVRIEATKESGIVSINSLQLVDMFLDSDKWVNLFPTVVSKAETVKVLERGLAGNRSGALQLMFEQMHVLSPFVQPREFQFLRFCQQIEEGLVIADVSFDSFQQKSSIFHSWKYPSGCLIQELPNGYSMVTWVEHVEVDDKIQAHPLYKDIIAKGIAYGAERWIMELQRISERFAAFYVEKIPDHDTSGVINSLEGRRSIMNFAHRMLKIFCDSITMADGLDFPLSDLANTSGVRVSIRESKTIGQPNGMIVAAATSIWLPLHYMKIFDFFTDDKNRAQWDVLTCGNQAHKVAHISNGIHPGNCVSIIRPFIPSENNALILQESFTTPMGTYVIYAPTDVATMTSAIMGEDSSMLPVLPSGFVISPDGDPNAALGAFDCSDGERLGGSLLTVGFQILASADGRNMPNRKAGAAVNSLLTSTILRVKDALNCNNMD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01072 708 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Phco11g01072 708 SUPERFAMILY Bet v1-like 476 699 - -
Phco11g01072 708 Pfam Homeodomain 26 80 IPR001356 GO:0003677
Phco11g01072 708 Pfam START domain 225 445 IPR002913 GO:0008289
Phco11g01072 708 SMART START_1 224 446 IPR002913 GO:0008289
Phco11g01072 708 SUPERFAMILY Homeodomain-like 7 82 IPR009057 -
Phco11g01072 708 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Phco11g01072 708 CDD START_ArGLABRA2_like 219 445 - -
Phco11g01072 708 ProSiteProfiles START domain profile. 215 449 IPR002913 GO:0008289
Phco11g01072 708 SMART HOX_1 24 86 IPR001356 GO:0003677
Phco11g01072 708 MobiDBLite consensus disorder prediction 1 33 - -
Phco11g01072 708 SUPERFAMILY Bet v1-like 217 447 - -
Phco11g01072 708 FunFam Homeobox-leucine zipper protein HDG1 11 98 - -
Phco11g01072 708 CDD homeodomain 30 83 IPR001356 GO:0003677
Phco11g01072 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 703 IPR042160 -
Phco11g01072 708 Gene3D - 222 434 IPR023393 -
Phco11g01072 708 Gene3D - 13 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01072 Phco-Chr11 8000729 8006112 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco11g01072 START 6.2e-32 CL0209