Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01071 ATGGATTTTGCTATGGGAAGTGCAGGTGGATCTGGGGATGATCAACATAATCACAATCACAATTACAGCCACAAGAAGAGCTCAAACAAAGGGAAAAAGGCCTACCATGGTCACAACGCTGATAGAACATCAAAGCTTGAAGAAATGTTTCGCAAGTGTCCACATCCAACTAAAAGCACAAGATGTCAAATAGCAGAAGAACTTGGACTTGATCCAAAACAAGTAAAATTTTGGTTTCAGAATAAGAGAACTCAAATAAAGACTCAAACTGAGAGAACAAATAACAGTATCTTTCGTATTGAGAATGAAAGGATACGTAATGATAACCTCTTATTAAGAGAGGCATTCAAAAATATAATTTGTCCATCTTGTGGAGGTCCATCTAATGTCGATGAAAAACGTCAATGTTCTCTAGAACAACTTCGTCTTGAAAATGCTCGTCTTAGAGAAGAGCATGAGAAGGTGTCTAGTGCTCTAGCAAAGTACATGGATAAACCAATGTTAGACCTAAACATGGACTACACTCTTATGAGGGGATCTTCATCACAAGGTGGCTCAATGAGTGATTCATTTCAAGATGAAGATATCATGTCCAACCCTGGGAGAAAAATAACACAAATGGAAAAAATAGTGATGTCACAAATTGCAGTGGCTGCTAAGGAAGAATTAATTAAGCTTTTGTGCACTAATGAGCCCATATGGGTCAAATCTTCAAATGATCAAAGATTTGTTCTTCATCTTGAAAGCTACGAAACATTCTTTCCAAGGATTAATCACTTCAAGAATTCCCAAGCCCGTGTAGAATCCTCAAAAGATTCACGAGTCGTGAGAATTAAGGCAACTGAATTAGTTGACATGTTTTTGAACTCGGAAAATTGGGCAAATCTTTTCTCAACAATTGTTACAAAAGCACGCACAATCGAAGTACTTGAAAATGGTTCAAATCGAAGTGGAGTTTTGTTATTGATGAATGAAGAGATGCATGTTCTTTCACCTTTAGTTCCATCTAGAGAATTGTGTTTTCTTCGTTATTGTGAACAAATTGAAGCACATTCATGGGTGATAGTAGATGTTTCGGTTGATTGCACCAATGGGAACAACAATCCTAAGTATTGGAGGTGTCCCTCTGGATGCATGATTCATGAAATTTCAAATGAGTTGTGTTGGATTTCTTGGGTTGAACATGTGGAAGTGGATGAGAAGATTGAAACACATCAACTCTACAAAGATATAGTTAATAATAATATTGCATATGGAGCAGAAAGATGGCTTTTGGAACTTCAAAGAATGTGTGCAAGATTTACAAGTGTTGGAGCTGAATGCATACCTAATTACGACTTCTATGGAGTGATCACTACTCTTGGAGGAAGAAAAAATATGATGAATTTTTCTGATCAAATGGTGAAAAACTTCTATGGAATTTTAAACATTTCAACTAAGAGGGACTTCCTAGAACATTTACCTGAGGAGAATATTAATATTAGGATTACTACTCGGAAATACACAAACTCAAGTCAATCAAATGCCATGATTATATTCATTGCTACCACTTCTTTTCGGCTTCCACTCCCCTCAGAAAATGTTTTTGACTTCTTTAGAGATCCAATAAAACGTGCTAAGTGGGATGTTATGTGTTATGAGAGTCCCGTAAATGAAGTTGCACGTATCTCCATTGGAACTCAACCTAGCAACTACATATCAATTATTCAGCCCGTCCACCGAACTGCAAATAACATGGCTATTATTCAAGAAAGTTGTATTGACCCTTTGGGATCATATGTTGTATATTCCCCTGTCAATATATCTGATATAAAGATGGCAATAAATGGTGAAGAATCAACAACAATGGCAATTTTTCCATCAGGCATTGTCATATCAAAGGATGAGCGATCTATTACAAACGCTGCATGGAGTAGTGGAAGTGATGATACAAGAACACATAGTACTCTATTGACTGTGGCTTTCCAAATACTGATGAATGGTCCAACAACTATGATAGCAGAATCAAAGACTGTTGTTAACTCTCTCATGACCTCAACAATACAAAATATAAACCATGCTTTGATAAATGGTTCTAATTTAGAGTTTTAA 2091 0.3639 MDFAMGSAGGSGDDQHNHNHNYSHKKSSNKGKKAYHGHNADRTSKLEEMFRKCPHPTKSTRCQIAEELGLDPKQVKFWFQNKRTQIKTQTERTNNSIFRIENERIRNDNLLLREAFKNIICPSCGGPSNVDEKRQCSLEQLRLENARLREEHEKVSSALAKYMDKPMLDLNMDYTLMRGSSSQGGSMSDSFQDEDIMSNPGRKITQMEKIVMSQIAVAAKEELIKLLCTNEPIWVKSSNDQRFVLHLESYETFFPRINHFKNSQARVESSKDSRVVRIKATELVDMFLNSENWANLFSTIVTKARTIEVLENGSNRSGVLLLMNEEMHVLSPLVPSRELCFLRYCEQIEAHSWVIVDVSVDCTNGNNNPKYWRCPSGCMIHEISNELCWISWVEHVEVDEKIETHQLYKDIVNNNIAYGAERWLLELQRMCARFTSVGAECIPNYDFYGVITTLGGRKNMMNFSDQMVKNFYGILNISTKRDFLEHLPEENINIRITTRKYTNSSQSNAMIIFIATTSFRLPLPSENVFDFFRDPIKRAKWDVMCYESPVNEVARISIGTQPSNYISIIQPVHRTANNMAIIQESCIDPLGSYVVYSPVNISDIKMAINGEESTTMAIFPSGIVISKDERSITNAAWSSGSDDTRTHSTLLTVAFQILMNGPTTMIAESKTVVNSLMTSTIQNINHALINGSNLEF 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01071 696 MobiDBLite consensus disorder prediction 1 42 - -
Phco11g01071 696 Gene3D - 15 101 - -
Phco11g01071 696 SUPERFAMILY Homeodomain-like 25 93 IPR009057 -
Phco11g01071 696 CDD START_ArGLABRA2_like 209 432 - -
Phco11g01071 696 Pfam START domain 215 433 IPR002913 GO:0008289
Phco11g01071 696 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 28 688 IPR042160 -
Phco11g01071 696 ProSiteProfiles START domain profile. 205 436 IPR002913 GO:0008289
Phco11g01071 696 SUPERFAMILY Bet v1-like 457 685 - -
Phco11g01071 696 SMART HOX_1 30 93 IPR001356 GO:0003677
Phco11g01071 696 Pfam Homeodomain 38 87 IPR001356 GO:0003677
Phco11g01071 696 CDD homeodomain 32 89 IPR001356 GO:0003677
Phco11g01071 696 SMART START_1 214 433 IPR002913 GO:0008289
Phco11g01071 696 Coils Coil 138 165 - -
Phco11g01071 696 Gene3D - 214 433 IPR023393 -
Phco11g01071 696 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Phco11g01071 696 SUPERFAMILY Bet v1-like 206 434 - -
Phco11g01071 696 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01071 Phco-Chr11 7972652 7977682 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco11g01071 START 8.5e-35 CL0209