Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01060 ATGAAGCCATTTAGCCTTTTAGTGTTATCTTTGTATTTTTTCTCCGTGGTGGGGCAGCTTCCTTCTCAGGACATTTTAGCATTACTGGAGTTTAAGAAAGGCGTCAAACATGACCCCAGCGGCTATGTACTCAATTCCTGGAATGAGGAATCCATTGATTTTGATGGATGCCCATCTTCATGGAATGGAGTTTTGTGCAATGGTGGTAATGTTGCTGGGGTTGTCCTTGATAACTTGGGTCTCTCTGCTGACACAGACTTGAGTATGTTTTCAAATCTCACTAAGCTTGTAAAACTCTCCATGTCCAACAATTCCATAACAGGAAATCTACATAGCAGCATTGCTGAGTTCAAAAGCCTTGAGTTCCTGGATATTTCCAATAACCTCTTTTCCTCATCTTTGCCACTGAAAATTGGTAAATTAAGCAGTCTGCAGAATCTGTCTTTAGCTGGAAATAATTTCTCTGGTCCAATTCCCGACTCTATTTCAGAAATGGCTTCCATCAAGTCCCTGGATTTGAGCCGCAACTCTTTCTCTGGAGAACTGCCTGTGTTGTTGACAAAAGTGACTAGCCTTGTATCTCTTAACCTGTCTCATAATGGATTCACTGGAAAAATTCCCAAAGGTTTTGAGATGATTACTGTTCTTGAAAAACTTGACTTGCATGGGAATATGCTTGAAGGTAATTTGGATGTTGAATTTTTGCTATTATCGAGTGCCAGCTATGTTGATTTAAGTGAGAACATGCTGTCTAGTTCTGATTCCAAGCAGAAGTTTCTACCACGACTATCTGAAAGTATTAAGCATCTGAATTTAAGCCACAACCAGCTTACGGGATCATTGGCCAGTGGAGTTGCCGAACCTGTTTTTGAAAACTTGAAAGTGTTAGACCTCAGCTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTCCAGGTCCTCCGGCTTAGCAACAACATATTTTCAGGATTTATTCCGAATGGCCTACTGAAAGGAGACTCCTTGGTTTTAACTGAACTGGATTTGAGTGGCAACAATCTCTCTGGGCCACTAAGTATAATTACATCCACAACACTTCACTCTCTTAACCTCTCATCAAATCAGTTCACTGGCGAACTGCCGCCCCTAACAGGAAGCTGTGCTGTACTCGATCTGTCAAACAACAAATTAGAAGGAAATTTAACCAGGATGTTGAAATGGGGGAATATAGAATTTCTTGACCTCAGTGGCAATCATTTGATGGGGACCATTCCAGAGGAAACTCCTCAATTTTTGCGACTAAATTATTTGAATTTATCCCATAATTCTCTTAGCAGCTCCCTTCCAAAAGTCTTGACACAGTATCCAAAGCTGAGAGTGCTTGACATTAGTTTCAACCAACTAGATGGACCACTTCTATCTGGTCTACTCACAATGCCCACATTGCGAGAGCTGCATCTTGAAAATAATGTGATCTCTGGTGGCATCAATTTCTCATCTTCTCCTGACCAATCCGATCTTCAGATTCTTGATCTTTCTCATAACCAGCTTAATGGCTATTTTCCTGATAAGTTTGGGTCATTAACTAGCCTTAAAGTGCTAAATATTGCTGGAAATAATTTTTCTGGCTCTCTTCCAACCACCATTGCTGACATGAATTCACTTGACTCCATGGATATATCAGAGAATCATTTTACTGGACCTTTACCAGATAACATGCCAAAGGGACTCCAAAATTTCAATGCTTCTGAAAATGATCTATCTGGACTTGTCCCTGAAGTTTTTAGGAAGTTCCCTAGCTCTTCTTTCTTTCCTGGGAATTCTAAGTTACATTTTCCAAATGGTCCTCCAGGATCAACTGCTTCACCTGCTGAAAGTTCCAAGAGGAAGCATTTGAACACCATTGTTAAAGTAATAATCATAGTGTCATGTGTGGTTGCTCTCTTCATTTTAATCCTGCTTGCAGTCTTCATACACTATATACGTATATCAAGATCTCCACCAGAATATGATACAAGTAAGGATATCCACAGGCATCCTCAACCTATTATCTCGGCTCCTGTTCGAACTACTGATAGGGGTGGTGCTTTGGTTGTTTCAGCCGAGGACCTTGTGACCACACGTAAAGAGTCGCCATCAGACGTAATAAGCTCTGATGAAAAAATTGCAGCTGTAACAGGGTTCTCTCCATCAAAACAAAGCCACTTTTCATGGTCACCGGAATCTGGCGATTCATTCACTGGTGAAAATCTTGCAAGACTAGATACAAGGTCACCAGATCGGTTGATTGGAGAGCTGCATTTTCTTGATGATTCAATAACATTGACGCCAGAGGAGCTCTCAAGGGCCCCAGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTATAAGGCCACTCTGGAGAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTAGCAAAACAGAGAAAAGAATTTGTCAAGGAAACCAAAAAATTTGCTAACATCAGACATCCAAATGTTGTGGGATTGAGAGGATATTATTGGGGCCCTACACAGCACGAGAAGCTCATCCTTTCAGATTACATCTCACCGGGAAGTCTTGCAAGCTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCATTAACTTGGATCCAGAGACTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCCATCCCTCATGGGAACCTCAAAGCCACCAATGTGTTGTTAGACACAACTGATATGAATGCACGAGTTGCTGATTACTGCCTTCACCGGCTCATGACTCAAGCAGGTACTATTGAGCAGATTCTTGATGCTGGGGTCTTAGGTTATCGAGCACCTGAGTTAGCTTCCTCCAAGAAGCCAATGCCCTCCTTCAAGTCAGACGTTTATGCTTTTGGAGTGATACTTTTGGAACTTCTAACTGGAAGGTGTGCTGGTGATGTGATATCTAGTGAGGAGGGAGGTGTTGATCTGACAGATTGGGTGAGGGTGCGTGTGGCAGAAGGCAGAGGCTCAGAATGTTTTGATGCTACCTTGATGCCAGAAATGAGCAATCCTGTTGTAGAAAAGGGAATGAAGGAGGTCCTGGGAATAGCCATGCGATGCATTCGATCAGTTTCTGAAAGGCCTGGCATCAAAACTATATATGAAGATCTCTCTTCTATATAG 3189 0.4189 MKPFSLLVLSLYFFSVVGQLPSQDILALLEFKKGVKHDPSGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSMFSNLTKLVKLSMSNNSITGNLHSSIAEFKSLEFLDISNNLFSSSLPLKIGKLSSLQNLSLAGNNFSGPIPDSISEMASIKSLDLSRNSFSGELPVLLTKVTSLVSLNLSHNGFTGKIPKGFEMITVLEKLDLHGNMLEGNLDVEFLLLSSASYVDLSENMLSSSDSKQKFLPRLSESIKHLNLSHNQLTGSLASGVAEPVFENLKVLDLSYNQLDGELPGFDFVYDLQVLRLSNNIFSGFIPNGLLKGDSLVLTELDLSGNNLSGPLSIITSTTLHSLNLSSNQFTGELPPLTGSCAVLDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLMGTIPEETPQFLRLNYLNLSHNSLSSSLPKVLTQYPKLRVLDISFNQLDGPLLSGLLTMPTLRELHLENNVISGGINFSSSPDQSDLQILDLSHNQLNGYFPDKFGSLTSLKVLNIAGNNFSGSLPTTIADMNSLDSMDISENHFTGPLPDNMPKGLQNFNASENDLSGLVPEVFRKFPSSSFFPGNSKLHFPNGPPGSTASPAESSKRKHLNTIVKVIIIVSCVVALFILILLAVFIHYIRISRSPPEYDTSKDIHRHPQPIISAPVRTTDRGGALVVSAEDLVTTRKESPSDVISSDEKIAAVTGFSPSKQSHFSWSPESGDSFTGENLARLDTRSPDRLIGELHFLDDSITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKETKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWIQRLKIAVDVARGLNYLHFDRAIPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELASSKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRVRVAEGRGSECFDATLMPEMSNPVVEKGMKEVLGIAMRCIRSVSERPGIKTIYEDLSSI 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01060 1062 Gene3D Ribonuclease Inhibitor 24 134 IPR032675 -
Phco11g01060 1062 Gene3D Ribonuclease Inhibitor 135 189 IPR032675 -
Phco11g01060 1062 Gene3D Ribonuclease Inhibitor 190 256 IPR032675 -
Phco11g01060 1062 FunFam Pollen receptor-like kinase 1 858 1062 - -
Phco11g01060 1062 Pfam Protein tyrosine and serine/threonine kinase 784 982 IPR001245 GO:0004672|GO:0006468
Phco11g01060 1062 PANTHER OS07G0626500 PROTEIN 8 1062 - -
Phco11g01060 1062 SUPERFAMILY L domain-like 41 379 - -
Phco11g01060 1062 Gene3D Ribonuclease Inhibitor 257 625 IPR032675 -
Phco11g01060 1062 SUPERFAMILY Protein kinase-like (PK-like) 783 1059 IPR011009 -
Phco11g01060 1062 Gene3D Transferase(Phosphotransferase) domain 1 859 1062 - -
Phco11g01060 1062 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Phco11g01060 1062 Pfam Leucine rich repeat 411 466 IPR001611 GO:0005515
Phco11g01060 1062 FunFam Leucine-rich repeat receptor-like protein kinase 765 857 - -
Phco11g01060 1062 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Phco11g01060 1062 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 357 616 - -
Phco11g01060 1062 Gene3D Phosphorylase Kinase; domain 1 773 857 - -
Phco11g01060 1062 SUPERFAMILY L domain-like 289 596 - -
Phco11g01060 1062 Pfam Leucine rich repeat N-terminal domain 22 67 IPR013210 -
Phco11g01060 1062 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 20 264 - -
Phco11g01060 1062 Pfam Leucine Rich repeat 342 354 IPR001611 GO:0005515
Phco11g01060 1062 Pfam Leucine Rich repeat 266 279 IPR001611 GO:0005515
Phco11g01060 1062 Pfam Leucine Rich repeat 292 306 IPR001611 GO:0005515
Phco11g01060 1062 Pfam Leucine Rich repeat 361 377 IPR001611 GO:0005515
Phco11g01060 1062 ProSiteProfiles Protein kinase domain profile. 780 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01060 Phco-Chr11 7865050 7869177 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco11g01060 PK_Tyr_Ser-Thr 2.1e-28 CL0016