Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01047 ATGGCACTTTCTTTGCACAAGGACTCAGTCAACAACCAGATGGATTCAAGCAAGTATGTTAGGTACACACCTGAGCAGGTTGAGGCTTTGGAGAGGGTCTATGCCGAATGTCCCAAGCCAAGTTCTTTGCGGAGGCAGCAGCTCATCAGAGAGTGCCCCATCCTTTCTAATATTGAACCCAAACAAATCAAAGTTTGGTTTCAGAATAGAAGGTGTCGTGAGAAGCAGAGGAAGGAAGCTTCTCGGCTGCAGACAGTGAACAGAAAGCTGACTGCGATGAACAAACTGTTAATGGAAGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTTTACGAGAATGGATATATGAAGCAACAGATACAGACTGCCTCTGCTGGCACCACCACAGACAATAGCTGTGAGTCTGTCGTAATGAGTGGTCAGAATCAACAGCAAAACCCAACACCTCAGCATCCCAATAGGGATGCCAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGTGTGGCAGCACGAGCCTGCGGCCTTGTGAGTCTTGAACCCACTAAGGTTGCTGAGATTCTTAAAGATCGTCAGTCGTGGTATCGTGACTGCCGATGCGTGGAAGTATTGAGTATAGTTCCCACTGGGAATGGGGGCACCATAGAGCTCATGTACATGCAGACATATGCGCCCACAACACTGGCAGCAGCGAGGGACTTTTGGACACTGAGATACACGACAAGTTTGGAAGATGGAAGTCTCGTGATATGTGAGAGATCATTGACATCCTCAACTGGTGGCCCCACAGGCCCTCCTTCTACAACCTTCATTAGAGCTGAAATGCTTCCCAGCGGTTATCTGATTAGGCCCTGTGAGGGTGGGGGATCCATTATTCACATAGTGGATCATATTGATTTAGATGTATGGAGTGTCCCCGAAGTACTGAGGCCCCTGTATGAATCATCAAAAATCTTGGCTCAGAAATTGACCATTGCTGCCTTGCAACATATAAGACAGATAGCACAAGAATCGAGTGGAGAAATTCAGTATGGTGGTGGACGCCAGCCTGCTGTATTGAGAACATTTAGTCAGAGACTTTGCAGGGGATTTAATGATGCTGTGAATGGGTTTGTTGACGATGGTTGGTCGCTGATGGGTACTGACGGGGTGGAAGATGTGACTATAGCTATAAACTCTTCTCCAAACAAGTTTTTGGGGTCTAATTACAATGCTTCCATGTTCCCAGCATTCGGAGGTGGGGTCTTGTGTGCCAAGGCATCAATGCTCCTGCAGAATGTTCCACCTGCTTTACTTGTTCGTTTTTTGAGAGAGCATCGATCAGAATGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGTCTTAAAGCTAGTCCCTATGCAGTTCCCTGTGCAAGGCCTGGTGGCTTTCCCAGCAGCCAGGTCATTTTACCTCTTGCTCATACTATTGAGCATGAAGAGTTTCTGGAGGTGGTTCGCATAGAGGGTCATGCATTTTCTTCCGAGGATGTCACGTTGGCTCGTGATATGTATCTATTGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGACGAGTCCTTTGCAGATGATGCTCTGTTACTGCCATCTGGTTTTCGTGTCATTCCATTAGATCCTAAATCAGATGGTCCAGCTGCAACTCGGACATTGGATTTGGCATCAACAATGGAAGTAGGATCAGCTAATACTCGTCCAGCCGGTGAAGCTGATTTGAATGGGTACAACCTGAGGTCGGTCCTTACTATTGCTTTCCAATTTACCTTCGAAAATCATACACGGGACAATGTTGCTGCAATGGCTCGCCAGTATGTGCGTAGTGTTGTTGGATCCGTTCAGAGGGTTGCCATGGCAATTGCTCCTTCCAGGCTTAGCACTCAACTGGGGCCAAAGTCACTTCCTGGTTCCCCAGAGGCCCTTACCTTAGCACGATGGATCAGTAGAAGCTACAGGATCCACACTGGCACAGAGCTTTTTAGAGCTGAATCCACAGCAGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCCGATGCAATCATGTGCTGCACTGTGAAAACAAATGCATCTCCAGTGTTCACCTTTGCTAATCAAGCTGGGTTAGACATGCTTGAAACTACTCTAGTCGCACTTCAAGACATAATGCTTGATAAAGTTCTTGATGAATCTGGCAGGAAGGTTCTTTGTTCTGAGTTCTCCAAGATAATGCAACAGGGTTTTGCTTATCTGCCAGCTGGGATATGTGTATCAAGTATGAATCGGCCAGTGTCTTATGAGCAGGCCATTGCATGGAAAGTCCTGAATGATGATGATTCTAATCACTGCCTAGCCTTCATGTTTATGAGTTGGTCTTTTGTATGA 2541 0.4707 MALSLHKDSVNNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIQTASAGTTTDNSCESVVMSGQNQQQNPTPQHPNRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRQSWYRDCRCVEVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPSTTFIRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGTDGVEDVTIAINSSPNKFLGSNYNASMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSSEDVTLARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPAATRTLDLASTMEVGSANTRPAGEADLNGYNLRSVLTIAFQFTFENHTRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQLGPKSLPGSPEALTLARWISRSYRIHTGTELFRAESTAGDAILKQLWHHSDAIMCCTVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKVLCSEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMSWSFV 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01047 846 SMART START_1 166 376 IPR002913 GO:0008289
Phco11g01047 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 846 IPR044830 GO:0003700
Phco11g01047 846 MobiDBLite consensus disorder prediction 128 160 - -
Phco11g01047 846 Gene3D - 185 378 IPR023393 -
Phco11g01047 846 CDD homeodomain 18 78 IPR001356 GO:0003677
Phco11g01047 846 Gene3D - 10 84 - -
Phco11g01047 846 Pfam MEKHLA domain 701 845 IPR013978 -
Phco11g01047 846 Coils Coil 87 107 - -
Phco11g01047 846 CDD bZIP 70 109 - -
Phco11g01047 846 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Phco11g01047 846 SMART HOX_1 15 81 IPR001356 GO:0003677
Phco11g01047 846 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Phco11g01047 846 FunFam homeobox-leucine zipper protein ATHB-15 202 383 - -
Phco11g01047 846 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Phco11g01047 846 Pfam START domain 167 374 IPR002913 GO:0008289
Phco11g01047 846 SUPERFAMILY Bet v1-like 167 378 - -
Phco11g01047 846 MobiDBLite consensus disorder prediction 128 157 - -
Phco11g01047 846 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Phco11g01047 846 CDD START_ArGLABRA2_like 161 377 - -
Phco11g01047 846 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01047 Phco-Chr11 7774138 7779504 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco11g01047 START 1.1e-51 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01047 11 7774138 7779504 Phco11g01047 11 7774138 7779504 ECH