Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01030 ATGAGACGACCTCTGGACGAAACAAAAACCCAATTGCGCCCTCCAGAATCACGAAGCAGCAAGCTGAGTTTTTCCGTTTCAGTCTCTCCTATTTCTTCCACAACAGTGACACACTCTTCCGTCGCCTCCGAATGCATCACATTTACACGCCCCTTTCAAATCCCTAATCCGCTTCAAATCCACTCTTCAATTCCAATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACCGCTCCCTCCGCCGCCGCCGCTCCCTCCGGACCGCTCGTCCAGCATGACTCCTCCGCTGCAGCTTCCGCCATGTCCAACGGAGGTCCTCCAGCCCCAGCCCCCTCCGGAACCGAACCCGCGGCCGTCAACGTCCCCGGGCGGCGGAGCTTCCGTCAGACGGTATGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTTCTGCACCAGTACGACAAGGCGCGGATGCCTGTGTGCCGATTCTTCAGGCTCTATGGAGAGTGTCGAGAACAGGATTGCGTGTATAAACACACGAATGAAGACATCAAAGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGACATGCAAAATCTCCTGGTCCTCCACCTCCTGTTGAAGAGGTCCTTCAGAAGATCCAACATTTATATTCCTACAATTATAACTCATCTAACAAATTTTTCCAACAAAGGGGTTCTAGCTATACCCAACAAGCTGAAAAATCCCAGCTTCCTCAAGGAACTAATTCTACAAATCAAGGGGTGACTGGAAAACCATTACCAGCAGAGTCGGGAAATGCCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCCGGTCAGCCAGAGCCAAATACAAAATATTGCTAATGGCCAGCCTAATCAAGCCAGTAGAGCTGCTACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCTACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGTAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAACTTCTCGGTTAAATGGTTGAAGTTATGTGAACTGTCTTTCCACAAAACTCGCCACTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCAATCGGAGAGCAACTGGCATCGTTGCTTTATCTTGAGCCGGATGGTGAACTTATGGCCGTTTCAGTTGCAGCCGAGTCTAAACGGGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGATGAGAGCTTTGGCCATGGTGTAGGGCCAGCTGTTCAAGGCAGGGGTAGGGGCAGAGGTATGATGTGGCCACCTCATATGCCTCTTGCACGTGGAGCCCGACCCATGCCTGGAATGCCGGGCTTTAACCCTGTAATGATGGGTGATGGGTTATCCTATGGGCCCGTTGCACCTGACGGTTTTGGTATGCCAGATCTTTTTGGTGTGGGACCCCGTGCTTTTGCACCATACGGTCCCAGGTTCTCTGGTGATTTTGGAGGTCCTCCAGCAGCCATGATGTTTCGTGGGCGACCTTCTCAGCCTGGGATGTTTCCAGGTGGTGGCTTTGGGATGATGATGAATCCTGGACGTGGTCCCTTCATGGGGGGGATGGGGGTTGCAGGGGCAAATCCACCAAGAGGTGGTAGGCCGGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCCTACCTCAGAACACAAATCGTCTTGCCAAAAGAGATCAAAGAACTACTGATAGAAATGATAGGTATGGTTCCGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCACCTGATGATGATATGCAGTATCAGCAAGGATACAAAGCGAACCAGGATGATCATCCTGCTGTGAACAACTTCCGGAATGATGACAGTGAAAGTGAGGATGAAGCACCTAGGAGGTCAAGACACGGAGAGGGGAAAAAGAAAAGGCGAGGCCCAGAAGATGTTAATACAAACTATAATCATTAG 2286 0.4926 MRRPLDETKTQLRPPESRSSKLSFSVSVSPISSTTVTHSSVASECITFTRPFQIPNPLQIHSSIPMEDSEGVLSFDFEGGLDTAPSAAAAPSGPLVQHDSSAAASAMSNGGPPAPAPSGTEPAAVNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSSYTQQAEKSQLPQGTNSTNQGVTGKPLPAESGNAQPQQQVQQSQQPVSQSQIQNIANGQPNQASRAATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEDESFGHGVGPAVQGRGRGRGMMWPPHMPLARGARPMPGMPGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQNTNRLAKRDQRTTDRNDRYGSGSEQGKSQDMLSQSGAPDDDMQYQQGYKANQDDHPAVNNFRNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01030 761 CDD YTH 323 457 IPR007275 GO:0003723
Phco11g01030 761 MobiDBLite consensus disorder prediction 647 665 - -
Phco11g01030 761 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 127 188 - -
Phco11g01030 761 MobiDBLite consensus disorder prediction 471 485 - -
Phco11g01030 761 ProSiteProfiles YTH domain profile. 322 457 IPR007275 GO:0003723
Phco11g01030 761 Gene3D ph1033 like domains 302 460 - -
Phco11g01030 761 SMART c3hfinal6 160 186 IPR000571 GO:0046872
Phco11g01030 761 SMART c3hfinal6 132 158 IPR000571 GO:0046872
Phco11g01030 761 SMART c3hfinal6 188 212 IPR000571 GO:0046872
Phco11g01030 761 MobiDBLite consensus disorder prediction 722 755 - -
Phco11g01030 761 MobiDBLite consensus disorder prediction 86 126 - -
Phco11g01030 761 MobiDBLite consensus disorder prediction 671 685 - -
Phco11g01030 761 MobiDBLite consensus disorder prediction 1 26 - -
Phco11g01030 761 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 98 744 IPR045168 -
Phco11g01030 761 ProSiteProfiles Zinc finger C3H1-type profile. 186 213 IPR000571 GO:0046872
Phco11g01030 761 MobiDBLite consensus disorder prediction 637 761 - -
Phco11g01030 761 MobiDBLite consensus disorder prediction 686 721 - -
Phco11g01030 761 MobiDBLite consensus disorder prediction 471 532 - -
Phco11g01030 761 Gene3D - 127 190 - -
Phco11g01030 761 ProSiteProfiles Zinc finger C3H1-type profile. 132 159 IPR000571 GO:0046872
Phco11g01030 761 MobiDBLite consensus disorder prediction 244 298 - -
Phco11g01030 761 MobiDBLite consensus disorder prediction 496 514 - -
Phco11g01030 761 SUPERFAMILY CCCH zinc finger 132 163 IPR036855 GO:0046872
Phco11g01030 761 Pfam YT521-B-like domain 401 456 IPR007275 GO:0003723
Phco11g01030 761 Pfam YT521-B-like domain 322 384 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01030 Phco-Chr11 7623867 7640195 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco11g01030 YTH 4.3e-45 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01030 11 7623867 7640195 Phco11g01030 11 7623867 7640195 ECH