Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01013 ATGGCTTATTCAGCCGAACCCTCATCTTCTTTGAGCTTTACATCATCTTCCCATTTATCAAATGGCTCAGTTAGTCACAACATATGCTCTTCTTACGGCTCTGACCCTGGACCTAACCTTGAGGTCATCAGTTTGAGCAAGCTTAGCTCCAACTTGGAGCAGCTTTTGATTGAATCTGATTGTGATTATAGTGATGCTGACATCATTGTGGAAGGAATTCCAGTTAGTGTTCATCGATGTATTCTTGCCTCCAGAAGTAAGTTTTTCCAAGAATTATTCAAGAGTGGGAAGGGGTCATCAGAAAAAGAAGGGAAATTGAAGTATAACATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATATTCCTGGGCTATGTATATACTGGTAAACTCAAGCCGTCTCCAATGGAGGTGTCTACATGTGTTGACCATGTATGTGCTCATGATGCTTGTAGACCTGCAATTAACTTTGCTGTGGAGTTGATCTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGCGACGTCTACTTAACTTTATAGGAAAGGCTCTTGTGGAAGATGTCATTCCAATCCTTACTGTTGCTTTCCATTGTAAATTGAGTCAACTCGTCACTCAATGTATTGATAGGGTGGCCAGATCAGACCTTGACCAGATTTCAATTGACAAAGAGCTTCCCCATGAACTCTCAGGAAAAGTTAAATTGCTCCGCCACAACCCTCAGCAAGATGCTGAAAATGATGCCTCTGCACTGGATGCTTTGTCTCTAAAACGAATCACTAGAATACACAAGGCACTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTTTAAATGAGTCAGAGATTACTTTAGATGAAGCCCATGCTCTCCATTATGCTGCTGCCTATTGTGACCCCAAGGTTGTTTCTGAGGTACTTGGTTTGGGACTGGCTAATGTTAATCTTCGGAATTCTCGGGGCTACCCGGTGCTTCATATTGCTGCCATGCGGAAAGAGCCCTCCATCATAGTATCCCTACTCACGAAAGGGGCTTGTGCATCAGATTTGACTTTTGACGGTCAGAGTGCTGTTAGTATTTGTAGAAGGTTGACAAGGCCAAAGGATTATCATGCAAAAACAGAACAGGGAAAAGAAACAAACAAAGATCGGATATGCATTGATGTTCTTGAAAGAGAAATGCGGAGGAATCCACTGGCTGGGGATGCCTGTATCTCTTCCCATACCATGGCTGATGACCTCCACATGAAACTACTATACCTTGAGAACAGAGTGGCATTTGCAAGACTTTTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCGCATGCTGAGACAACATCTGAGTTTGCTGGTCTCTCTGCATCAAACTCAAAACTTTCAAATGGCAACTTGAGGGAGGTTGATCTCAATGAGACTCCCATAGTGCAAAATAAGAGACTTCTTTCTAGAATGGAAGCCCTTATGAAGACAGTGAAAATGGGGCGGCGCTACTTCCCACACTGCTCAGATGTGCTGGACAAGTTCATGGAGGATGACCTACCTGACTTGTTTTATCTTGAAAAGGGTACTCAAGAAGAGCAGAGAATCAAAAGAACACGGTTCATAGAGCTTAAAGATGATGTCCACAAGGCCTTCAGCAAGGACAAGACCGAGTTTAGCCGCTCTGGCATTTCATCTTCATCTTCCTCATCCTCCCTCAAAGATTCTGTTGTACATTACAAAGCTAGGAAAGTGTAA 1773 0.4298 MAYSAEPSSSLSFTSSSHLSNGSVSHNICSSYGSDPGPNLEVISLSKLSSNLEQLLIESDCDYSDADIIVEGIPVSVHRCILASRSKFFQELFKSGKGSSEKEGKLKYNMSDLLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSTCVDHVCAHDACRPAINFAVELIYASSIFQIPELVSLFQRRLLNFIGKALVEDVIPILTVAFHCKLSQLVTQCIDRVARSDLDQISIDKELPHELSGKVKLLRHNPQQDAENDASALDALSLKRITRIHKALDSDDVELVKLLLNESEITLDEAHALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYPVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPLAGDACISSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSASNSKLSNGNLREVDLNETPIVQNKRLLSRMEALMKTVKMGRRYFPHCSDVLDKFMEDDLPDLFYLEKGTQEEQRIKRTRFIELKDDVHKAFSKDKTEFSRSGISSSSSSSSLKDSVVHYKARKV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01013 590 PANTHER REGULATORY PROTEIN NPR3 10 582 IPR044292 GO:0009862|GO:2000022|GO:2000031
Phco11g01013 590 FunFam Regulatory protein NPR3 38 222 - -
Phco11g01013 590 Pfam BTB/POZ domain 62 151 IPR000210 GO:0005515
Phco11g01013 590 MobiDBLite consensus disorder prediction 563 581 - -
Phco11g01013 590 Gene3D - 264 404 IPR036770 -
Phco11g01013 590 SMART BTB_4 64 190 IPR000210 GO:0005515
Phco11g01013 590 SUPERFAMILY POZ domain 52 189 IPR011333 -
Phco11g01013 590 MobiDBLite consensus disorder prediction 559 590 - -
Phco11g01013 590 FunFam regulatory protein NPR3-like 264 404 - -
Phco11g01013 590 SUPERFAMILY Ankyrin repeat 258 373 IPR036770 -
Phco11g01013 590 Gene3D Potassium Channel Kv1.1; Chain A 39 222 IPR011333 -
Phco11g01013 590 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Phco11g01013 590 CDD BTB_POZ_NPR_plant 47 190 - -
Phco11g01013 590 SMART ANK_2a 330 362 IPR002110 GO:0005515
Phco11g01013 590 SMART ANK_2a 267 295 IPR002110 GO:0005515
Phco11g01013 590 SMART ANK_2a 296 326 IPR002110 GO:0005515
Phco11g01013 590 Pfam NPR1/NIM1 like defence protein C terminal 372 576 IPR021094 -
Phco11g01013 590 Pfam Domain of unknown function (DUF3420) 225 273 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01013 Phco-Chr11 7485996 7489204 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco11g01013 NPR1_like_C 4.4e-97 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01013 11 7485996 7489204 Phco11g01013 11 7485996 7489204 ECH